Two's company, three (or more) is a simplex: Algebraic-topological tools for understanding higher-order structure in neural data

C Giusti, R Ghrist, DS Bassett - Journal of computational neuroscience, 2016 - Springer
The language of graph theory, or network science, has proven to be an exceptional tool for
addressing myriad problems in neuroscience. Yet, the use of networks is predicated on a …

Network analysis of particles and grains

L Papadopoulos, MA Porter, KE Daniels… - Journal of Complex …, 2018 - academic.oup.com
The arrangements of particles and forces in granular materials have a complex organization
on multiple spatial scales that range from local structures to mesoscale and system-wide …

Random walks on simplicial complexes and the normalized Hodge 1-Laplacian

MT Schaub, AR Benson, P Horn, G Lippner… - SIAM Review, 2020 - SIAM
Using graphs to model pairwise relationships between entities is a ubiquitous framework for
studying complex systems and data. Simplicial complexes extend this dyadic model of …

A survey of vectorization methods in topological data analysis

D Ali, A Asaad, MJ Jimenez, V Nanda… - … on Pattern Analysis …, 2023 - ieeexplore.ieee.org
Attempts to incorporate topological information in supervised learning tasks have resulted in
the creation of several techniques for vectorizing persistent homology barcodes. In this …

Pllay: Efficient topological layer based on persistent landscapes

K Kim, J Kim, M Zaheer, J Kim… - Advances in …, 2020 - proceedings.neurips.cc
We propose PLLay, a novel topological layer for general deep learning models based on
persistence landscapes, in which we can efficiently exploit the underlying topological …

[HTML][HTML] Beyond the clustering coefficient: A topological analysis of node neighbourhoods in complex networks

AP Kartun-Giles, G Bianconi - Chaos, Solitons & Fractals: X, 2019 - Elsevier
Abstract In Network Science, node neighbourhoods, also called ego-centered networks,
have attracted significant attention. In particular the clustering coefficient has been …

Contagion in simplicial complexes

Z Li, Z Deng, Z Han, K Alfaro-Bittner, B Barzel… - Chaos, Solitons & …, 2021 - Elsevier
The propagation of information in social, biological and technological systems represents a
crucial component in their dynamic behavior. When limited to pairwise interactions, a rather …

Persistence paths and signature features in topological data analysis

I Chevyrev, V Nanda… - IEEE transactions on …, 2018 - ieeexplore.ieee.org
We introduce a new feature map for barcodes as they arise in persistent homology
computation. The main idea is to first realize each barcode as a path in a convenient vector …

Persistent homology of attractors for action recognition

V Venkataraman, KN Ramamurthy… - 2016 IEEE international …, 2016 - ieeexplore.ieee.org
In this paper, we propose a novel framework for dynamical analysis of human actions from
3D motion capture data using topological data analysis. We model human actions using the …

Statistical analysis of persistence intensity functions

YC Chen, D Wang, A Rinaldo, L Wasserman - arxiv preprint arxiv …, 2015 - arxiv.org
Persistence diagrams are two-dimensional plots that summarize the topological features of
functions and are an important part of topological data analysis. A problem that has received …