mRNA cap**: biological functions and applications

A Ramanathan, GB Robb, SH Chan - Nucleic acids research, 2016 - academic.oup.com
The 5′ m7G cap is an evolutionarily conserved modification of eukaryotic mRNA. Decades
of research have established that the m7G cap serves as a unique molecular module that …

Nuclear mRNA decay: regulatory networks that control gene expression

X Rambout, LE Maquat - Nature Reviews Genetics, 2024 - nature.com
Proper regulation of mRNA production in the nucleus is critical for the maintenance of
cellular homoeostasis during adaptation to internal and environmental cues. Over the past …

[HTML][HTML] Distinctive patterns of transcription and RNA processing for human lincRNAs

M Schlackow, T Nojima, T Gomes, A Dhir… - Molecular cell, 2017 - cell.com
Numerous long intervening noncoding RNAs (lincRNAs) are generated from the mammalian
genome by RNA polymerase II (Pol II) transcription. Although multiple functions have been …

Transcription termination and the control of the transcriptome: why, where and how to stop

O Porrua, D Libri - Nature reviews Molecular cell biology, 2015 - nature.com
Transcription termination occurs when the polymerase is released after a transcription event,
thus delimitating transcription units; however, the functional importance of termination …

The rhino-deadlock-cutoff complex licenses noncanonical transcription of dual-strand piRNA clusters in Drosophila

F Mohn, G Sienski, D Handler, J Brennecke - Cell, 2014 - cell.com
Argonaute proteins of the PIWI clade are central to transposon silencing in animal gonads.
Their target specificity is defined by 23–30 nt PIWI interacting RNAs (piRNAs), which mostly …

[HTML][HTML] ARS2 instructs early transcription termination-coupled RNA decay by recruiting ZC3H4 to nascent transcripts

JO Rouvière, A Salerno-Kochan, S Lykke-Andersen… - Molecular cell, 2023 - cell.com
The RNA-binding ARS2 protein is centrally involved in both early RNA polymerase II
(RNAPII) transcription termination and transcript decay. Despite its essential nature, the …

A restrictor complex of ZC3H4, WDR82, and ARS2 integrates with PNUTS to control unproductive transcription

C Estell, L Davidson, JD Eaton, H Kimura, VAM Gold… - Molecular cell, 2023 - cell.com
The transcriptional termination of unstable non-coding RNAs (ncRNAs) is poorly understood
compared to coding transcripts. We recently identified ZC3H4-WDR82 (" restrictor") as …

Identification of a nuclear exosome decay pathway for processed transcripts

N Meola, M Domanski, E Karadoulama, Y Chen… - Molecular cell, 2016 - cell.com
The RNA exosome is fundamental for the degradation of RNA in eukaryotic nuclei. Substrate
targeting is facilitated by its co-factor Mtr4p/hMTR4, which links to RNA-binding protein …

Small nucleolar RNAs tell a different tale

J Kufel, P Grzechnik - Trends in Genetics, 2019 - cell.com
Transcribing RNA Polymerase II interacts with multiple factors that orchestrate maturation
and stabilisation of messenger RNA. For the majority of noncoding RNAs, the polymerase …

Targeting RNA for processing or destruction by the eukaryotic RNA exosome and its cofactors

JC Zinder, CD Lima - Genes & development, 2017 - genesdev.cshlp.org
The eukaryotic RNA exosome is an essential and conserved protein complex that can
degrade or process RNA substrates in the 3′-to-5′ direction. Since its discovery nearly …