Ecology and evolution of Mycobacterium tuberculosis

S Gagneux - Nature Reviews Microbiology, 2018 - nature.com
Tuberculosis (TB) is the number one cause of human death due to an infectious disease.
The causative agents of TB are a group of closely related bacteria known as the …

[HTML][HTML] Consequences of genomic diversity in Mycobacterium tuberculosis

M Coscolla, S Gagneux - Seminars in immunology, 2014 - Elsevier
The causative agent of human tuberculosis, Mycobacterium tuberculosis complex (MTBC),
comprises seven phylogenetically distinct lineages associated with different geographical …

A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life

DH Parks, M Chuvochina, DW Waite, C Rinke… - Nature …, 2018 - nature.com
Taxonomy is an organizing principle of biology and is ideally based on evolutionary
relationships among organisms. Development of a robust bacterial taxonomy has been …

[HTML][HTML] Genoty** coronavirus SARS-CoV-2: methods and implications

C Yin - Genomics, 2020 - Elsevier
The emerging global infectious COVID-19 disease by novel Severe Acute Respiratory
Syndrome Coronavirus 2 (SARS-CoV-2) presents critical threats to global public health and …

Mycobacterium tuberculosis lineage 4 comprises globally distributed and geographically restricted sublineages

D Stucki, D Brites, L Jeljeli, M Coscolla, Q Liu… - Nature …, 2016 - nature.com
Generalist and specialist species differ in the breadth of their ecological niches. Little is
known about the niche width of obligate human pathogens. Here we analyzed a global …

A robust SNP barcode for ty** Mycobacterium tuberculosis complex strains

F Coll, R McNerney, JA Guerra-Assunção… - Nature …, 2014 - nature.com
Strain-specific genomic diversity in the Mycobacterium tuberculosis complex (MTBC) is an
important factor in pathogenesis that may affect virulence, transmissibility, host response …

Evolutionary history and global spread of the Mycobacterium tuberculosis Bei**g lineage

M Merker, C Blin, S Mona, N Duforet-Frebourg… - Nature …, 2015 - nature.com
Mycobacterium tuberculosis strains of the Bei**g lineage are globally distributed and are
associated with the massive spread of multidrug-resistant (MDR) tuberculosis in Eurasia …

Co‐evolution of Mycobacterium tuberculosis and Homo sapiens

D Brites, S Gagneux - Immunological reviews, 2015 - Wiley Online Library
The causative agent of human tuberculosis (TB), M ycobacterium tuberculosis, is an obligate
pathogen that evolved to exclusively persist in human populations. For M. tuberculosis to …

Whole-genome sequencing of rifampicin-resistant Mycobacterium tuberculosis strains identifies compensatory mutations in RNA polymerase genes

I Comas, S Borrell, A Roetzer, G Rose, B Malla… - Nature …, 2012 - nature.com
Epidemics of drug-resistant bacteria emerge worldwide, even as resistant strains frequently
have reduced fitness compared to their drug-susceptible counterparts. Data from model …

Rapid whole-genome sequencing of Mycobacterium tuberculosis isolates directly from clinical samples

AC Brown, JM Bryant, K Einer-Jensen… - Journal of clinical …, 2015 - journals.asm.org
The rapid identification of antimicrobial resistance is essential for effective treatment of
highly resistant Mycobacterium tuberculosis. Whole-genome sequencing provides …