Machine learning force fields

OT Unke, S Chmiela, HE Sauceda… - Chemical …, 2021 - ACS Publications
In recent years, the use of machine learning (ML) in computational chemistry has enabled
numerous advances previously out of reach due to the computational complexity of …

Natural food colorants and preservatives: A review, a demand, and a challenge

C Novais, AK Molina, RMV Abreu… - Journal of agricultural …, 2022 - ACS Publications
The looming urgency of feeding the growing world population along with the increasing
consumers' awareness and expectations have driven the evolution of food production …

Biomolecular dynamics with machine-learned quantum-mechanical force fields trained on diverse chemical fragments

OT Unke, M Stöhr, S Ganscha, T Unterthiner… - Science …, 2024 - science.org
Molecular dynamics (MD) simulations allow insights into complex processes, but accurate
MD simulations require costly quantum-mechanical calculations. For larger systems, efficient …

RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental …

SK Burley, C Bhikadiya, C Bi, S Bittrich… - Nucleic acids …, 2021 - academic.oup.com
Abstract The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB
PDB), the US data center for the global PDB archive and a founding member of the …

[HTML][HTML] Scalable molecular dynamics on CPU and GPU architectures with NAMD

JC Phillips, DJ Hardy, JDC Maia, JE Stone… - The Journal of …, 2020 - pubs.aip.org
NAMD is a molecular dynamics program designed for high-performance simulations of very
large biological objects on CPU-and GPU-based architectures. NAMD offers scalable …

Molecular dynamics simulation for all

SA Hollingsworth, RO Dror - Neuron, 2018 - cell.com
The impact of molecular dynamics (MD) simulations in molecular biology and drug discovery
has expanded dramatically in recent years. These simulations capture the behavior of …

Chiral inorganic nanostructures

W Ma, L Xu, AF de Moura, X Wu, H Kuang, C Xu… - Chemical …, 2017 - ACS Publications
The field of chiral inorganic nanostructures is rapidly expanding. It started from the
observation of strong circular dichroism during the synthesis of individual nanoparticles …

HIV-1 uncoats in the nucleus near sites of integration

RC Burdick, C Li, MH Munshi, JMO Rawson… - Proceedings of the …, 2020 - pnas.org
HIV-1 capsid core disassembly (uncoating) must occur before integration of viral genomic
DNA into the host chromosomes, yet remarkably, the timing and cellular location of …

Water determines the structure and dynamics of proteins

MC Bellissent-Funel, A Hassanali, M Havenith… - Chemical …, 2016 - ACS Publications
Water is an essential participant in the stability, structure, dynamics, and function of proteins
and other biomolecules. Thermodynamically, changes in the aqueous environment affect …

Two-dimensional halide perovskite nanomaterials and heterostructures

E Shi, Y Gao, BP Finkenauer, AH Coffey… - Chemical Society …, 2018 - pubs.rsc.org
Over the last several years, there has been tremendous progress in the development of
nanoscale halide perovskite materials and devices that possess a wide range of band gaps …