Advances in chemical and biological methods to identify microorganisms—from past to present

R Franco-Duarte, L Černáková, S Kadam, K S. Kaushik… - Microorganisms, 2019 - mdpi.com
Fast detection and identification of microorganisms is a challenging and significant feature
from industry to medicine. Standard approaches are known to be very time-consuming and …

Metabolically engineered Corynebacterium glutamicum for bio-based production of chemicals, fuels, materials, and healthcare products

J Becker, CM Rohles, C Wittmann - Metabolic engineering, 2018 - Elsevier
Corynebacterium glutamicum is a major workhorse in industrial biotechnology. For the past
several decades, this soil bacterium has been used to produce the amino acids l-glutamate …

Genome-wide association studies dissect the genetic networks underlying agronomical traits in soybean

C Fang, Y Ma, S Wu, Z Liu, Z Wang, R Yang, G Hu… - Genome biology, 2017 - Springer
Abstract Background Soybean (Glycine max [L.] Merr.) is one of the most important oil and
protein crops. Ever-increasing soybean consumption necessitates the improvement of …

From zero to hero—design-based systems metabolic engineering of Corynebacterium glutamicum for l-lysine production

J Becker, O Zelder, S Häfner, H Schröder… - Metabolic …, 2011 - Elsevier
Here, we describe the development of a genetically defined strain of l-lysine hyperproducing
Corynebacterium glutamicum by systems metabolic engineering of the wild type …

A roadmap for interpreting 13C metabolite labeling patterns from cells

JM Buescher, MR Antoniewicz, LG Boros… - Current opinion in …, 2015 - Elsevier
Highlights•13 C tracer analysis can be used to probe intracellular metabolism in
cells.•Steady state labeling patterns can quantify nutrient contributions.•Steady state labeling …

IsoCor: correcting MS data in isotope labeling experiments

P Millard, F Letisse, S Sokol, JC Portais - Bioinformatics, 2012 - academic.oup.com
Mass spectrometry (MS) is widely used for isotopic labeling studies of metabolism and other
biological processes. Quantitative applications—eg metabolic flux analysis—require tools to …

[HTML][HTML] Biobased PET from lignin using an engineered cis, cis-muconate-producing Pseudomonas putida strain with superior robustness, energy and redox …

M Kohlstedt, A Weimer, F Weiland, J Stolzenberger… - Metabolic …, 2022 - Elsevier
Polyethylene terephthalate (PET), the most common synthetic polyester today, is largely
produced from fossil resources, contributing to global warming. Consequently, sustainable …

[HTML][HTML] Enabling the valorization of guaiacol-based lignin: Integrated chemical and biochemical production of cis, cis-muconic acid using metabolically engineered …

N Barton, L Horbal, S Starck, M Kohlstedt… - Metabolic …, 2018 - Elsevier
Lignin is nature's second most abundant polymer and displays a largely unexploited
renewable resource for value-added bio-production. None of the lignin-based fermentation …

OpenFLUX: efficient modelling software for 13C-based metabolic flux analysis

LE Quek, C Wittmann, LK Nielsen, JO Krömer - Microbial cell factories, 2009 - Springer
Background The quantitative analysis of metabolic fluxes, ie, in vivo activities of intracellular
enzymes and pathways, provides key information on biological systems in systems biology …

[HTML][HTML] GC-MS-based 13C metabolic flux analysis resolves the parallel and cyclic glucose metabolism of Pseudomonas putida KT2440 and Pseudomonas …

M Kohlstedt, C Wittmann - Metabolic engineering, 2019 - Elsevier
The genus Pseudomonas comprises approximately 200 species with numerous isolates that
are common inhabitants of soil, water, and vegetation and has been of particular interest for …