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Integrating QSAR modelling and deep learning in drug discovery: the emergence of deep QSAR
Quantitative structure–activity relationship (QSAR) modelling, an approach that was
introduced 60 years ago, is widely used in computer-aided drug design. In recent years …
introduced 60 years ago, is widely used in computer-aided drug design. In recent years …
Machine learning-aided generative molecular design
Abstract Machine learning has provided a means to accelerate early-stage drug discovery
by combining molecule generation and filtering steps in a single architecture that leverages …
by combining molecule generation and filtering steps in a single architecture that leverages …
Invalid SMILES are beneficial rather than detrimental to chemical language models
MA Skinnider - Nature Machine Intelligence, 2024 - nature.com
Generative machine learning models have attracted intense interest for their ability to
sample novel molecules with desired chemical or biological properties. Among these …
sample novel molecules with desired chemical or biological properties. Among these …
Pocketflow is a data-and-knowledge-driven structure-based molecular generative model
Y Jiang, G Zhang, J You, H Zhang, R Yao… - Nature Machine …, 2024 - nature.com
Deep learning-based molecular generation has extensive applications in many fields,
particularly drug discovery. However, the majority of current deep generative models are …
particularly drug discovery. However, the majority of current deep generative models are …
Artificial intelligence for natural product drug discovery
Developments in computational omics technologies have provided new means to access
the hidden diversity of natural products, unearthing new potential for drug discovery. In …
the hidden diversity of natural products, unearthing new potential for drug discovery. In …
[HTML][HTML] Chemical language models for de novo drug design: Challenges and opportunities
F Grisoni - Current Opinion in Structural Biology, 2023 - Elsevier
Generative deep learning is accelerating de novo drug design, by allowing the generation of
molecules with desired properties on demand. Chemical language models–which generate …
molecules with desired properties on demand. Chemical language models–which generate …
Evaluation guidelines for machine learning tools in the chemical sciences
Abstract Machine learning (ML) promises to tackle the grand challenges in chemistry and
speed up the generation, improvement and/or ordering of research hypotheses. Despite the …
speed up the generation, improvement and/or ordering of research hypotheses. Despite the …
Chemical language modeling with structured state space sequence models
Generative deep learning is resha** drug design. Chemical language models (CLMs)–
which generate molecules in the form of molecular strings–bear particular promise for this …
which generate molecules in the form of molecular strings–bear particular promise for this …
Generative machine learning for de novo drug discovery: A systematic review
DD Martinelli - Computers in Biology and Medicine, 2022 - Elsevier
Recent research on artificial intelligence indicates that machine learning algorithms can
auto-generate novel drug-like molecules. Generative models have revolutionized de novo …
auto-generate novel drug-like molecules. Generative models have revolutionized de novo …
Leveraging molecular structure and bioactivity with chemical language models for de novo drug design
M Moret, I Pachon Angona, L Cotos, S Yan… - Nature …, 2023 - nature.com
Generative chemical language models (CLMs) can be used for de novo molecular structure
generation by learning from a textual representation of molecules. Here, we show that hybrid …
generation by learning from a textual representation of molecules. Here, we show that hybrid …