The gut microbiota and its biogeography

G McCallum, C Tropini - Nature Reviews Microbiology, 2024 - nature.com
Biogeography is the study of species distribution and diversity within an ecosystem and is at
the core of how we understand ecosystem dynamics and interactions at the macroscale. In …

Soil plastisphere: exploration methods, influencing factors, and ecological insights

C Wang, L Wang, YS Ok, DCW Tsang, D Hou - Journal of hazardous …, 2022 - Elsevier
Microplastic (MP), an emerging contaminant, is globally prevalent and poses potential
environmental threats and ecological risks to both aquatic and terrestrial ecosystems. When …

Visualization of metabolites and microbes at high spatial resolution using MALDI mass spectrometry imaging and in situ fluorescence labeling

P Bourceau, B Geier, V Suerdieck, T Bien… - Nature …, 2023 - nature.com
Label-free molecular imaging techniques such as matrix-assisted laser desorption ionization
mass spectrometry imaging (MALDI-MSI) enable the direct and simultaneous map** of …

Spatial organization of a model 15-member human gut microbiota established in gnotobiotic mice

JL Mark Welch, Y Hasegawa… - Proceedings of the …, 2017 - National Acad Sciences
Knowledge of the spatial organization of the gut microbiota is important for understanding
the physical and molecular interactions among its members. These interactions are thought …

Biogeography of the oral microbiome: the site-specialist hypothesis

JL Mark Welch, FE Dewhirst… - Annual review of …, 2019 - annualreviews.org
Microbial communities are complex and dynamic, composed of hundreds of taxa interacting
across multiple spatial scales. Advances in sequencing and imaging technology have led to …

Strain-level epidemiology of microbial communities and the human microbiome

Y Yan, LH Nguyen, EA Franzosa, C Huttenhower - Genome medicine, 2020 - Springer
The biological importance and varied metabolic capabilities of specific microbial strains
have long been established in the scientific community. Strains have, in the past, been …

Highly multiplexed spatial map** of microbial communities

H Shi, Q Shi, B Grodner, JS Lenz, WR Zipfel, IL Brito… - Nature, 2020 - nature.com
Map** the complex biogeography of microbial communities in situ with high taxonomic
and spatial resolution poses a major challenge because of the high density and rich …

The wound microbiota: microbial mechanisms of impaired wound healing and infection

A Uberoi, A McCready-Vangi, EA Grice - Nature Reviews Microbiology, 2024 - nature.com
The skin barrier protects the human body from invasion by exogenous and pathogenic
microorganisms. A breach in this barrier exposes the underlying tissue to microbial …

The periodontal war: microbes and immunity

JL Ebersole, D Dawson III, P Emecen‐Huja… - Periodontology …, 2017 - Wiley Online Library
Maintenance of periodontal health or transition to a periodontal lesion reflects the
continuous and ongoing battle between the vast microbial ecology in the oral cavity and the …

Spatial metagenomic characterization of microbial biogeography in the gut

RU Sheth, M Li, W Jiang, PA Sims, KW Leong… - Nature …, 2019 - nature.com
Spatial structuring is important for the maintenance of natural ecological systems,. Many
microbial communities, including the gut microbiome, display intricate spatial …