[HTML][HTML] Relieving metabolic burden to improve robustness and bioproduction by industrial microorganisms
Metabolic burden is defined by the influence of genetic manipulation and environmental
perturbations on the distribution of cellular resources. The rewiring of microbial metabolism …
perturbations on the distribution of cellular resources. The rewiring of microbial metabolism …
Innovation trends in industrial biotechnology
J Nielsen, CB Tillegreen, D Petranovic - Trends in biotechnology, 2022 - cell.com
Microbial fermentations are used for the sustainable production of a range of products. Due
to increasing trends in the food sector toward plant-based foods and meat and dairy product …
to increasing trends in the food sector toward plant-based foods and meat and dairy product …
Metabolomics reveal nanoplastic-induced mitochondrial damage in human liver and lung cells
Plastic debris in the global biosphere is an increasing concern, and nanoplastic (NPs)
toxicity in humans is far from being understood. Studies have indicated that NPs can affect …
toxicity in humans is far from being understood. Studies have indicated that NPs can affect …
Deep learning-based kcat prediction enables improved enzyme-constrained model reconstruction
Enzyme turnover numbers (k cat) are key to understanding cellular metabolism, proteome
allocation and physiological diversity, but experimentally measured k cat data are sparse …
allocation and physiological diversity, but experimentally measured k cat data are sparse …
Bioenergetics in environmental adaptation and stress tolerance of aquatic ectotherms: linking physiology and ecology in a multi-stressor landscape
I Sokolova - Journal of Experimental Biology, 2021 - journals.biologists.com
Energy metabolism (encompassing energy assimilation, conversion and utilization) plays a
central role in all life processes and serves as a link between the organismal physiology …
central role in all life processes and serves as a link between the organismal physiology …
Reconstruction, simulation and analysis of enzyme-constrained metabolic models using GECKO Toolbox 3.0
Genome-scale metabolic models (GEMs) are computational representations that enable
mathematical exploration of metabolic behaviors within cellular and environmental …
mathematical exploration of metabolic behaviors within cellular and environmental …
Mitochondrial ATP generation is more proteome efficient than glycolysis
Metabolic efficiency profoundly influences organismal fitness. Nonphotosynthetic organisms,
from yeast to mammals, derive usable energy primarily through glycolysis and respiration …
from yeast to mammals, derive usable energy primarily through glycolysis and respiration …
Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0
Genome-scale metabolic models (GEMs) have been widely used for quantitative exploration
of the relation between genotype and phenotype. Streamlined integration of enzyme …
of the relation between genotype and phenotype. Streamlined integration of enzyme …
Whole-cell modeling in yeast predicts compartment-specific proteome constraints that drive metabolic strategies
IE Elsemman, A Rodriguez Prado, P Grigaitis… - Nature …, 2022 - nature.com
When conditions change, unicellular organisms rewire their metabolism to sustain cell
maintenance and cellular growth. Such rewiring may be understood as resource re …
maintenance and cellular growth. Such rewiring may be understood as resource re …
Adaptations in metabolism and protein translation give rise to the Crabtree effect in yeast
Aerobic fermentation, also referred to as the Crabtree effect in yeast, is a well-studied
phenomenon that allows many eukaryal cells to attain higher growth rates at high glucose …
phenomenon that allows many eukaryal cells to attain higher growth rates at high glucose …