Using MetaboAnalyst 5.0 for LC–HRMS spectra processing, multi-omics integration and covariate adjustment of global metabolomics data
Liquid chromatography coupled with high-resolution mass spectrometry (LC–HRMS) has
become a workhorse in global metabolomics studies with growing applications across …
become a workhorse in global metabolomics studies with growing applications across …
[HTML][HTML] High-throughput proteomics: a methodological mini-review
Proteomics plays a vital role in biomedical research in the post-genomic era. With the
technological revolution and emerging computational and statistic models, proteomic …
technological revolution and emerging computational and statistic models, proteomic …
Mobile genetic elements from the maternal microbiome shape infant gut microbial assembly and metabolism
T Vatanen, KS Jabbar, T Ruohtula, J Honkanen… - Cell, 2022 - cell.com
The perinatal period represents a critical window for cognitive and immune system
development, promoted by maternal and infant gut microbiomes and their metabolites. Here …
development, promoted by maternal and infant gut microbiomes and their metabolites. Here …
System-wide analysis of RNA and protein subcellular localization dynamics
Although the subcellular dynamics of RNA and proteins are key determinants of cell
homeostasis, their characterization is still challenging. Here we present an integrative …
homeostasis, their characterization is still challenging. Here we present an integrative …
Deciphering the immunopeptidome in vivo reveals new tumour antigens
Immunosurveillance of cancer requires the presentation of peptide antigens on major
histocompatibility complex class I (MHC-I) molecules,,,–. Current approaches to profiling of …
histocompatibility complex class I (MHC-I) molecules,,,–. Current approaches to profiling of …
Transcription-coupled repair of DNA–protein cross-links depends on CSA and CSB
Covalent DNA–protein cross-links (DPCs) are toxic DNA lesions that block replication and
require repair by multiple pathways. Whether transcription blockage contributes to the …
require repair by multiple pathways. Whether transcription blockage contributes to the …
[HTML][HTML] Map** diversity in African trypanosomes using high resolution spatial proteomics
African trypanosomes are dixenous eukaryotic parasites that impose a significant human
and veterinary disease burden on sub-Saharan Africa. Diversity between species and life …
and veterinary disease burden on sub-Saharan Africa. Diversity between species and life …
N1-methylpseudouridine found within COVID-19 mRNA vaccines produces faithful protein products
Synthetic mRNA technology is a promising avenue for treating and preventing disease. Key
to the technology is the incorporation of modified nucleotides such as N1 …
to the technology is the incorporation of modified nucleotides such as N1 …
LFQ-based peptide and protein intensity differential expression analysis
M Bai, J Deng, C Dai, J Pfeuffer… - Journal of Proteome …, 2023 - ACS Publications
Testing for significant differences in quantities at the protein level is a common goal of many
LFQ-based mass spectrometry proteomics experiments. Starting from a table of protein …
LFQ-based mass spectrometry proteomics experiments. Starting from a table of protein …
Cardiac glycosides protect wormseed wallflower (Erysimum cheiranthoides) against some, but not all, glucosinolate‐adapted herbivores
The chemical arms race between plants and insects is foundational to the generation and
maintenance of biological diversity. We asked how the evolution of a novel defensive …
maintenance of biological diversity. We asked how the evolution of a novel defensive …