Host genetics and infectious disease: new tools, insights and translational opportunities

AJ Kwok, A Mentzer, JC Knight - Nature Reviews Genetics, 2021 - nature.com
Understanding how human genetics influence infectious disease susceptibility offers the
opportunity for new insights into pathogenesis, potential drug targets, risk stratification …

Host–parasite co-evolution and its genomic signature

D Ebert, PD Fields - Nature Reviews Genetics, 2020 - nature.com
Studies in diverse biological systems have indicated that host–parasite co-evolution is
responsible for the extraordinary genetic diversity seen in some genomic regions, such as …

Acute bacterial meningitis

EC Wall, JM Chan, E Gil… - Current opinion in …, 2021 - journals.lww.com
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International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact

RA Gladstone, SW Lo, JA Lees, NJ Croucher… - …, 2019 - thelancet.com
Background Pneumococcal conjugate vaccines have reduced the incidence of invasive
pneumococcal disease, caused by vaccine serotypes, but non-vaccine-serotypes remain a …

Community-acquired bacterial meningitis

D van de Beek, MC Brouwer, U Koedel, EC Wall - The Lancet, 2021 - thelancet.com
Progress has been made in the prevention and treatment of community-acquired bacterial
meningitis during the past three decades but the burden of the disease remains high …

Next-generation microbiology: from comparative genomics to gene function

CM Kobras, AK Fenton, SK Sheppard - Genome Biology, 2021 - Springer
Microbiology is at a turning point in its 120-year history. Widespread next-generation
sequencing has revealed genetic complexity among bacteria that could hardly have been …

Malaria protection due to sickle haemoglobin depends on parasite genotype

G Band, EM Leffler, M Jallow, F Sisay-Joof, CM Ndila… - Nature, 2022 - nature.com
Host genetic factors can confer resistance against malaria, raising the question of whether
this has led to evolutionary adaptation of parasite populations. Here we searched for …

Improved prediction of bacterial genotype-phenotype associations using interpretable pangenome-spanning regressions

JA Lees, TT Mai, M Galardini, NE Wheeler… - MBio, 2020 - journals.asm.org
Discovery of genetic variants underlying bacterial phenotypes and the prediction of
phenotypes such as antibiotic resistance are fundamental tasks in bacterial genomics …

Population genomics of Group B Streptococcus reveals the genetics of neonatal disease onset and meningeal invasion

C Chaguza, D Jamrozy, MW Bijlsma… - Nature …, 2022 - nature.com
Abstract Group B Streptococcus (GBS), or Streptococcus agalactiae, is a pathogen that
causes preterm births, stillbirths, and acute invasive neonatal disease burden and mortality …

Forest and trees: exploring bacterial virulence with genome-wide association studies and machine learning

JP Allen, E Snitkin, NB Pincus, AR Hauser - Trends in microbiology, 2021 - cell.com
The advent of inexpensive and rapid sequencing technologies has allowed bacterial whole-
genome sequences to be generated at an unprecedented pace. This wealth of information …