Noncanonical roles of tRNAs: tRNA fragments and beyond

Z Su, B Wilson, P Kumar, A Dutta - Annual review of genetics, 2020 - annualreviews.org
As one of the most abundant and conserved RNA species, transfer RNAs (tRNAs) are well
known for their role in reading the codons on messenger RNAs and translating them into …

[HTML][HTML] Genome engineering on size reduction and complexity simplification: a review

XR Chen, YZ Cui, BZ Li, YJ Yuan - Journal of Advanced Research, 2024 - Elsevier
Background Genome simplification is an important topic in the field of life sciences that has
attracted attention from its conception to the present day. It can help uncover the essential …

Debugging and consolidating multiple synthetic chromosomes reveals combinatorial genetic interactions

Y Zhao, C Coelho, AL Hughes, L Lazar-Stefanita… - Cell, 2023 - cell.com
The Sc2. 0 project is building a eukaryotic synthetic genome from scratch. A major milestone
has been achieved with all individual Sc2. 0 chromosomes assembled. Here, we describe …

Design, construction, and functional characterization of a tRNA neochromosome in yeast

D Schindler, RSK Walker, S Jiang, AN Brooks, Y Wang… - Cell, 2023 - cell.com
Here, we report the design, construction, and characterization of a tRNA neochromosome, a
designer chromosome that functions as an additional, de novo counterpart to the native …

[HTML][HTML] Distinct silencer states generate epigenetic states of heterochromatin

DS Saxton, J Rine - Molecular Cell, 2022 - cell.com
Heterochromatic loci can exhibit different transcriptional states in genetically identical cells.
A popular model posits that the inheritance of modified histones is sufficient for inheritance …

Plant tRNA functions beyond their major role in translation

M Chery, L Drouard - Journal of Experimental Botany, 2023 - academic.oup.com
Transfer RNAs (tRNAs) are well known for their essential function as adapters in delivering
amino acids to ribosomes and making the link between mRNA and protein according to the …

Karyotype variation, spontaneous genome rearrangements affecting chemical insensitivity, and expression level polymorphisms in the plant pathogen Phytophthora …

MEH Matson, Q Liang, S Lonardi, HS Judelson - PLoS Pathogens, 2022 - journals.plos.org
Natural isolates of the potato and tomato pathogen Phytophthora infestans exhibit
substantial variation in virulence, chemical sensitivity, ploidy, and other traits. A chromosome …

On the track of the missing tRNA genes: a source of non-canonical functions?

R Ehrlich, M Davyt, I López, C Chalar… - Frontiers in Molecular …, 2021 - frontiersin.org
Cellular tRNAs appear today as a diverse population of informative macromolecules with
conserved general elements ensuring essential common functions and different and …

PlantRNA 2.0: an updated database dedicated to tRNAs of photosynthetic eukaryotes

V Cognat, G Pawlak, D Pflieger, L Drouard - The Plant Journal, 2022 - Wiley Online Library
SUMMARY PlantRNA (http://plantrna. ibmp. cnrs. fr/) is a comprehensive database of
transfer RNA (tRNA) gene sequences retrieved from fully annotated nuclear, plastidial and …

[PDF][PDF] Permutational analysis of Saccharomyces cerevisiae regulatory elements

N Dhillon, R Shelansky, B Townshend, M Jain… - Synthetic …, 2020 - academic.oup.com
Gene expression in Saccharomyces cerevisiae is regulated at multiple levels. Genomic and
epigenomic map** of transcription factors and chromatin factors has led to the delineation …