A survey on graphs extremal with respect to distance-based topological indices

K Xu, M Liu, I Gutman, B Furtula - MATCH Communications in …, 2014 - scidar.kg.ac.rs
A Survey on Graphs Extremal with Respect to Distance–Based Topological Indices Page 1 A
Survey on Graphs Extremal with Respect to Distance–Based Topological Indices Kexiang Xua …

The topology of fullerenes

P Schwerdtfeger, LN Wirz… - Wiley Interdisciplinary …, 2015 - Wiley Online Library
Fullerenes are carbon molecules that form polyhedral cages. Their bond structures are
exactly the planar cubic graphs that have only pentagon and hexagon faces. Strikingly, a …

Electrical networks and algebraic graph theory: Models, properties, and applications

F Dörfler, JW Simpson-Porco… - Proceedings of the IEEE, 2018 - ieeexplore.ieee.org
Algebraic graph theory is a cornerstone in the study of electrical networks ranging from
miniature integrated circuits to continental-scale power systems. Conversely, many …

AGL-score: algebraic graph learning score for protein–ligand binding scoring, ranking, docking, and screening

DD Nguyen, GW Wei - Journal of chemical information and …, 2019 - ACS Publications
Although algebraic graph theory-based models have been widely applied in physical
modeling and molecular studies, they are typically incompetent in the analysis and …

The analysis of electron densities: from basics to emergent applications

D Koch, M Pavanello, X Shao, M Ihara… - Chemical …, 2024 - ACS Publications
The electron density determines all properties of a system of nuclei and electrons. It is both
computable and observable. Its topology allows gaining insight into the mechanisms of …

GGL-Tox: geometric graph learning for toxicity prediction

J Jiang, R Wang, GW Wei - Journal of chemical information and …, 2021 - ACS Publications
Toxicity analysis is a major challenge in drug design and discovery. Recently significant
progress has been made through machine learning due to its accuracy, efficiency, and lower …

Modern chemical graph theory

LSG Leite, S Banerjee, Y Wei, J Elowitt… - Wiley Interdisciplinary …, 2024 - Wiley Online Library
Graph theory has a long history in chemistry. Yet as the breadth and variety of chemical data
is rapidly changing, so too do graph encoding methods and analyses that yield qualitative …

A review of mathematical representations of biomolecular data

DD Nguyen, Z Cang, GW Wei - Physical Chemistry Chemical Physics, 2020 - pubs.rsc.org
Recently, machine learning (ML) has established itself in various worldwide benchmarking
competitions in computational biology, including Critical Assessment of Structure Prediction …

Modeling biophysical and biological properties from the characteristics of the molecular electron density, electron localization and delocalization matrices, and the …

CF Matta - Journal of Computational Chemistry, 2014 - Wiley Online Library
The electron density and the electrostatic potential are fundamentally related to the
molecular hamiltonian, and hence are the ultimate source of all properties in the ground …

[PDF][PDF] On history of the Randić index and emerging hostility toward chemical graph theory

M Randić - MATCH Commun. Math. Comput. Chem, 2008 - match.pmf.kg.ac.rs
During 1974/75, after spending a year at Harvard as a faculty guest, I was visiting Tufts
University in Medford Massachusetts (a part of Boston area) where I came to consider the …