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Formulation, construction and analysis of kinetic models of metabolism: A review of modelling frameworks
Kinetic models are critical to predict the dynamic behaviour of metabolic networks.
Mechanistic kinetic models for large networks remain uncommon due to the difficulty of fitting …
Mechanistic kinetic models for large networks remain uncommon due to the difficulty of fitting …
Advancing metabolic models with kinetic information
Highlights•Kinetic models are crucial to understand complex dynamic processes.•Not all
model parameters need to be known precisely due to overlap** regulatory …
model parameters need to be known precisely due to overlap** regulatory …
The limitations of model-based experimental design and parameter estimation in sloppy systems
We explore the relationship among experimental design, parameter estimation, and
systematic error in sloppy models. We show that the approximate nature of mathematical …
systematic error in sloppy models. We show that the approximate nature of mathematical …
Model selection in systems biology depends on experimental design
Experimental design attempts to maximise the information available for modelling tasks. An
optimal experiment allows the inferred models or parameters to be chosen with the highest …
optimal experiment allows the inferred models or parameters to be chosen with the highest …
Differential equations in data analysis
I Dattner - Wiley Interdisciplinary Reviews: Computational …, 2021 - Wiley Online Library
Differential equations have proven to be a powerful mathematical tool in science and
engineering, leading to better understanding, prediction, and control of dynamic processes …
engineering, leading to better understanding, prediction, and control of dynamic processes …
Plant synthetic biology: quantifying the “known unknowns” and discovering the “unknown unknowns”
Plant Synthetic Biology: Quantifying the “Known Unknowns” and Discovering the “Unknown
Unknowns” | Plant Physiology | Oxford Academic Skip to Main Content Advertisement Oxford …
Unknowns” | Plant Physiology | Oxford Academic Skip to Main Content Advertisement Oxford …
Optimally designed model selection for synthetic biology
Modeling parts and circuits represents a significant roadblock to automating the Design-
Build-Test-Learn cycle in synthetic biology. Once models are developed, discriminating …
Build-Test-Learn cycle in synthetic biology. Once models are developed, discriminating …
[BOK][B] An introduction to computational systems biology: systems-level modelling of cellular networks
K Raman - 2021 - taylorfrancis.com
This book delivers a comprehensive and insightful account of applying mathematical
modelling approaches to very large biological systems and networks—a fundamental aspect …
modelling approaches to very large biological systems and networks—a fundamental aspect …
[PDF][PDF] Experimental Design under the Bradley-Terry Model.
Labels generated by human experts via comparisons exhibit smaller variance compared to
traditional sample labels. Collecting comparison labels is challenging over large datasets …
traditional sample labels. Collecting comparison labels is challenging over large datasets …
Bayesian inference of stochastic reaction networks using multifidelity sequential tempered Markov chain Monte Carlo
Stochastic reaction network models are often used to explain and predict the dynamics of
gene regulation in single cells. These models usually involve several parameters, such as …
gene regulation in single cells. These models usually involve several parameters, such as …