Navigating the pitfalls of applying machine learning in genomics

S Whalen, J Schreiber, WS Noble… - Nature Reviews Genetics, 2022 - nature.com
The scale of genetic, epigenomic, transcriptomic, cheminformatic and proteomic data
available today, coupled with easy-to-use machine learning (ML) toolkits, has propelled the …

Artificial intelligence and machine learning in precision and genomic medicine

S Quazi - Medical Oncology, 2022 - Springer
The advancement of precision medicine in medical care has led behind the conventional
symptom-driven treatment process by allowing early risk prediction of disease through …

Artificial intelligence in chemistry: current trends and future directions

ZJ Baum, X Yu, PY Ayala, Y Zhao… - Journal of Chemical …, 2021 - ACS Publications
The application of artificial intelligence (AI) to chemistry has grown tremendously in recent
years. In this Review, we studied the growth and distribution of AI-related chemistry …

Machine learning meets omics: applications and perspectives

R Li, L Li, Y Xu, J Yang - Briefings in Bioinformatics, 2022 - academic.oup.com
The innovation of biotechnologies has allowed the accumulation of omics data at an
alarming rate, thus introducing the era of 'big data'. Extracting inherent valuable knowledge …

High‐throughput metabolomics by 1D NMR

A Vignoli, V Ghini, G Meoni, C Licari… - Angewandte Chemie …, 2019 - Wiley Online Library
Metabolomics deals with the whole ensemble of metabolites (the metabolome). As one of
the‐omic sciences, it relates to biology, physiology, pathology and medicine; but metabolites …

COVID-19 salivary Raman fingerprint: innovative approach for the detection of current and past SARS-CoV-2 infections

C Carlomagno, D Bertazioli, A Gualerzi, S Picciolini… - Scientific reports, 2021 - nature.com
The pandemic of COVID-19 is continuously spreading, becoming a worldwide emergency.
Early and fast identification of subjects with a current or past infection must be achieved to …

Novel research and future prospects of artificial intelligence in cancer diagnosis and treatment

C Zhang, J Xu, R Tang, J Yang, W Wang, X Yu… - Journal of Hematology & …, 2023 - Springer
Research into the potential benefits of artificial intelligence for comprehending the intricate
biology of cancer has grown as a result of the widespread use of deep learning and …

DeepImpute: an accurate, fast, and scalable deep neural network method to impute single-cell RNA-seq data

C Arisdakessian, O Poirion, B Yunits, X Zhu… - Genome biology, 2019 - Springer
Single-cell RNA sequencing (scRNA-seq) offers new opportunities to study gene expression
of tens of thousands of single cells simultaneously. We present DeepImpute, a deep neural …

An end-to-end deep learning method for mass spectrometry data analysis to reveal disease-specific metabolic profiles

Y Deng, Y Yao, Y Wang, T Yu, W Cai, D Zhou… - Nature …, 2024 - nature.com
Untargeted metabolomic analysis using mass spectrometry provides comprehensive
metabolic profiling, but its medical application faces challenges of complex data processing …

Applications of machine learning in metabolomics: Disease modeling and classification

A Galal, M Talal, A Moustafa - Frontiers in genetics, 2022 - frontiersin.org
Metabolomics research has recently gained popularity because it enables the study of
biological traits at the biochemical level and, as a result, can directly reveal what occurs in a …