Highlights•HIV-1 within-host evolution is short-sighted and favours more virulent
viruses.•Systemic HIV-1 infection is mainly established by a single variant …

This article considers stochastic models for the spread of an infection in a structured
community, where this structured community is itself described by a random network model …

Background Adenoviruses are significant pathogens for the immunocompromised, arising
from primary infection or reinfection. Seroty** is insufficient to support nosocomial …

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The observed dynamics of infectious diseases are driven by processes across multiple
scales. Here we focus on two: within-host, that is, how an infection progresses inside a …

To identify and stop active HIV transmission chains new epidemiological techniques are
needed. Here, we describe the development of a multi-biomarker augmentation to …

Phylogenetic inference and reconstruction methods generate hypotheses on evolutionary
history. Competing inference methods are frequently used, and the evaluation of the …

HIV patients form clusters in HIV transmission networks. Accurate identification of these
transmission clusters is essential to effectively target public health interventions. One reason …

One approach to the reconstruction of infectious disease transmission trees from pathogen
genomic data has been to use a phylogenetic tree, reconstructed from pathogen sequences …

The failure propagation process has always been a research hotspot in the field of complex
system reliability. Most of the research studies focus on the inference of network structure …