Learning from co-expression networks: possibilities and challenges

EAR Serin, H Nijveen, HWM Hilhorst… - Frontiers in plant …, 2016 - frontiersin.org
Plants are fascinating and complex organisms. A comprehensive understanding of the
organization, function and evolution of plant genes is essential to disentangle important …

Clustering algorithms in biomedical research: a review

R Xu, DC Wunsch - IEEE reviews in biomedical engineering, 2010 - ieeexplore.ieee.org
Applications of clustering algorithms in biomedical research are ubiquitous, with typical
examples including gene expression data analysis, genomic sequence analysis, biomedical …

[HTML][HTML] Biclustering on expression data: A review

B Pontes, R Giráldez, JS Aguilar-Ruiz - Journal of biomedical informatics, 2015 - Elsevier
Biclustering has become a popular technique for the study of gene expression data,
especially for discovering functionally related gene sets under different subsets of …

Workload characterization and prediction in the cloud: A multiple time series approach

A Khan, X Yan, S Tao… - 2012 IEEE Network …, 2012 - ieeexplore.ieee.org
Cloud computing promises high scalability, flexibility and cost-effectiveness to satisfy
emerging computing requirements. To efficiently provision computing resources in the cloud …

FABIA: factor analysis for bicluster acquisition

S Hochreiter, U Bodenhofer, M Heusel, A Mayr… - …, 2010 - academic.oup.com
Motivation: Biclustering of transcriptomic data groups genes and samples simultaneously. It
is emerging as a standard tool for extracting knowledge from gene expression …

A comparative analysis of biclustering algorithms for gene expression data

K Eren, M Deveci, O Küçüktunç… - Briefings in …, 2013 - academic.oup.com
The need to analyze high-dimension biological data is driving the development of new data
mining methods. Biclustering algorithms have been successfully applied to gene expression …

A systematic comparative evaluation of biclustering techniques

VA Padilha, RJGB Campello - BMC bioinformatics, 2017 - Springer
Background Biclustering techniques are capable of simultaneously clustering rows and
columns of a data matrix. These techniques became very popular for the analysis of gene …

Nonalcoholic fatty liver disease stratification by liver lipidomics

O Vvedenskaya, TD Rose, O Knittelfelder… - Journal of lipid …, 2021 - ASBMB
Nonalcoholic fatty liver disease (NAFLD) is a common metabolic dysfunction leading to
hepatic steatosis. However, NAFLD's global impact on the liver lipidome is poorly …

Co-expression networks for plant biology: why and how

X Rao, RA Dixon - Acta biochimica et biophysica Sinica, 2019 - academic.oup.com
Co-expression network analysis is one of the most powerful approaches for interpretation of
large transcriptomic datasets. It enables characterization of modules of co-expressed genes …

[BOOK][B] Healthcare data analytics

CK Reddy, CC Aggarwal - 2015 - books.google.com
Supplying a comprehensive overview of healthcare analytics research, Healthcare Data
Analytics provides an understanding of the analytical techniques currently available to solve …