DEGnext: classification of differentially expressed genes from RNA-seq data using a convolutional neural network with transfer learning

T Kakati, DK Bhattacharyya, JK Kalita… - BMC …, 2022 - Springer
Background A limitation of traditional differential expression analysis on small datasets
involves the possibility of false positives and false negatives due to sample variation …

GeneSelectML: a comprehensive way of gene selection for RNA-Seq data via machine learning algorithms

O Dag, M Kasikci, O Ilk, M Yesiltepe - Medical & biological engineering & …, 2023 - Springer
Selection of differentially expressed genes (DEGs) is a vital process to discover the causes
of diseases. It has been shown that modelling of genomics data by considering relation …

Feature engineering from meta-data for prediction of differentially expressed genes: An investigation of Mus musculus exposed to space-conditions

M Okwori, A Eslami - Computational Biology and Chemistry, 2024 - Elsevier
Transcription profiling is a key process that can reveal those biological mechanisms driving
the response to various exposure conditions or gene perturbations. In this work, we …

RNA Sequences-Based Diagnosis of Parkinson's Disease Using Various Feature Selection Methods and Machine Learning

J Kim, HJ Park, Y Yoon - Applied Sciences, 2023 - mdpi.com
Parkinson's disease is a neurodegenerative disease that is associated with genetic and
environmental factors. However, the genes causing this degeneration have not been …