EMDB—the electron microscopy data bank

Nucleic acids research, 2024 - academic.oup.com
Abstract The Electron Microscopy Data Bank (EMDB) is the global public archive of three-
dimensional electron microscopy (3DEM) maps of biological specimens derived from …

Multiscale methods in drug design bridge chemical and biological complexity in the search for cures

RE Amaro, AJ Mulholland - Nature Reviews Chemistry, 2018 - nature.com
Drug action is inherently multiscale: it connects molecular interactions to emergent
properties at cellular and larger scales. Simulation techniques at each of these different …

EMPIAR: the electron microscopy public image archive

A Iudin, PK Korir, S Somasundharam… - Nucleic Acids …, 2023 - academic.oup.com
Public archiving in structural biology is well established with the Protein Data Bank (PDB;
wwPDB. org) catering for atomic models and the Electron Microscopy Data Bank (EMDB; …

[HTML][HTML] Advances in cryo-electron tomography for biology and medicine

RI Koning, AJ Koster, TH Sharp - Annals of Anatomy-Anatomischer …, 2018 - Elsevier
Cryo-electron tomography (CET) utilizes a combination of specimen cryo-fixation and multi-
angle electron microscopy imaging to produce three-dimensional (3D) volume …

The European Bioinformatics Institute in 2017: data coordination and integration

CE Cook, MT Bergman, G Cochrane… - Nucleic acids …, 2018 - academic.oup.com
Abstract The European Bioinformatics Institute (EMBL-EBI) supports life-science research
throughout the world by providing open data, open-source software and analytical tools, and …

Automated segmentation of fluorescence microscopy images for 3D cell detection in human-derived cardiospheres

M Salvi, U Morbiducci, F Amadeo, R Santoro… - Scientific reports, 2019 - nature.com
The 'cardiosphere'is a 3D cluster of cardiac progenitor cells recapitulating a stem cell niche-
like microenvironment with a potential for disease and regeneration modelling of the failing …

Recent breakthroughs in computational structural biology harnessing the power of sequences and structures

B Mészáros, E Park, D Malinverni, BI Sejdiu… - Current Opinion in …, 2023 - Elsevier
Recent advances in computational approaches and their integration into structural biology
enable tackling increasingly complex questions. Here, we discuss several key areas …

[HTML][HTML] Evolving data standards for cryo-EM structures

CL Lawson, HM Berman, W Chiu - Structural Dynamics, 2020 - pubs.aip.org
Electron cryo-microscopy (cryo-EM) is increasingly being used to determine 3D structures of
a broad spectrum of biological specimens from molecules to cells. Anticipating this progress …

Mol* Volumes and Segmentations: visualization and interpretation of cell imaging data alongside macromolecular structure data and biological annotations

A Chareshneu, A Midlik, CM Ionescu… - Nucleic Acids …, 2023 - academic.oup.com
Segmentation helps interpret imaging data in a biological context. With the development of
powerful tools for automated segmentation, public repositories for imaging data have added …