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EMDB—the electron microscopy data bank
Nucleic acids research, 2024 - academic.oup.com
Abstract The Electron Microscopy Data Bank (EMDB) is the global public archive of three-
dimensional electron microscopy (3DEM) maps of biological specimens derived from …
dimensional electron microscopy (3DEM) maps of biological specimens derived from …
Multiscale methods in drug design bridge chemical and biological complexity in the search for cures
Drug action is inherently multiscale: it connects molecular interactions to emergent
properties at cellular and larger scales. Simulation techniques at each of these different …
properties at cellular and larger scales. Simulation techniques at each of these different …
EMPIAR: the electron microscopy public image archive
A Iudin, PK Korir, S Somasundharam… - Nucleic Acids …, 2023 - academic.oup.com
Public archiving in structural biology is well established with the Protein Data Bank (PDB;
wwPDB. org) catering for atomic models and the Electron Microscopy Data Bank (EMDB; …
wwPDB. org) catering for atomic models and the Electron Microscopy Data Bank (EMDB; …
[HTML][HTML] Advances in cryo-electron tomography for biology and medicine
Cryo-electron tomography (CET) utilizes a combination of specimen cryo-fixation and multi-
angle electron microscopy imaging to produce three-dimensional (3D) volume …
angle electron microscopy imaging to produce three-dimensional (3D) volume …
The European Bioinformatics Institute in 2017: data coordination and integration
CE Cook, MT Bergman, G Cochrane… - Nucleic acids …, 2018 - academic.oup.com
Abstract The European Bioinformatics Institute (EMBL-EBI) supports life-science research
throughout the world by providing open data, open-source software and analytical tools, and …
throughout the world by providing open data, open-source software and analytical tools, and …
Automated segmentation of fluorescence microscopy images for 3D cell detection in human-derived cardiospheres
The 'cardiosphere'is a 3D cluster of cardiac progenitor cells recapitulating a stem cell niche-
like microenvironment with a potential for disease and regeneration modelling of the failing …
like microenvironment with a potential for disease and regeneration modelling of the failing …
Recent breakthroughs in computational structural biology harnessing the power of sequences and structures
Recent advances in computational approaches and their integration into structural biology
enable tackling increasingly complex questions. Here, we discuss several key areas …
enable tackling increasingly complex questions. Here, we discuss several key areas …
[HTML][HTML] Evolving data standards for cryo-EM structures
Electron cryo-microscopy (cryo-EM) is increasingly being used to determine 3D structures of
a broad spectrum of biological specimens from molecules to cells. Anticipating this progress …
a broad spectrum of biological specimens from molecules to cells. Anticipating this progress …
Mol* Volumes and Segmentations: visualization and interpretation of cell imaging data alongside macromolecular structure data and biological annotations
A Chareshneu, A Midlik, CM Ionescu… - Nucleic Acids …, 2023 - academic.oup.com
Segmentation helps interpret imaging data in a biological context. With the development of
powerful tools for automated segmentation, public repositories for imaging data have added …
powerful tools for automated segmentation, public repositories for imaging data have added …