[HTML][HTML] Rethinking fish biology and biotechnologies in the challenge era for burgeoning genome resources and strengthening food security

JF Gui, L Zhou, XY Li - Water Biology and Security, 2022 - Elsevier
Fish biology has been developed for more than 100 years, but some important
breakthroughs have been made in the last decade. Early studies commonly concentrated on …

Research advances in the genomics and applications for molecular breeding of aquaculture animals

X You, X Shan, Q Shi - Aquaculture, 2020 - Elsevier
High-throughput sequencing technologies have been extensively applied to genetics and
breeding in the aquaculture industry. To date, many aquaculture animal genomes have …

The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization

K Du, M Stöck, S Kneitz, C Klopp… - Nature ecology & …, 2020 - nature.com
Sturgeons seem to be frozen in time. The archaic characteristics of this ancient fish lineage
place it in a key phylogenetic position at the base of the~ 30,000 modern teleost fish …

[HTML][HTML] Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements

D Baranasic, M Hörtenhuber, PJ Balwierz, T Zehnder… - Nature …, 2022 - nature.com
Zebrafish, a popular organism for studying embryonic development and for modeling human
diseases, has so far lacked a systematic functional annotation program akin to those in other …

The hagfish genome and the evolution of vertebrates

F Marlétaz, N Timoshevskaya, VA Timoshevskiy… - Nature, 2024 - nature.com
As the only surviving lineages of jawless fishes, hagfishes and lampreys provide a crucial
window into early vertebrate evolution,–. Here we investigate the complex history, timing …

Comparative genome anatomy reveals evolutionary insights into a unique amphitriploid fish

Y Wang, XY Li, WJ Xu, K Wang, B Wu, M Xu… - Nature ecology & …, 2022 - nature.com
Triploids are rare in nature because of difficulties in meiotic and gametogenic processes,
especially in vertebrates. The Carassius complex of cyprinid teleosts contains sexual …

The allotetraploid origin and asymmetrical genome evolution of the common carp Cyprinus carpio

P Xu, J Xu, G Liu, L Chen, Z Zhou, W Peng… - Nature …, 2019 - nature.com
Common carp (Cyprinus carpio) is an allotetraploid species derived from recent whole
genome duplication and provides a model to study polyploid genome evolution in …

Parallel subgenome structure and divergent expression evolution of allo-tetraploid common carp and goldfish

JT Li, Q Wang, MD Huang Yang, QS Li, MS Cui… - Nature Genetics, 2021 - nature.com
How two subgenomes in allo-tetraploids adapt to coexistence and coordinate through
structure and expression evolution requires extensive studies. In the present study, we …

Transposon signatures of allopolyploid genome evolution

AM Session, DS Rokhsar - Nature Communications, 2023 - nature.com
Hybridization brings together chromosome sets from two or more distinct progenitor species.
Genome duplication associated with hybridization, or allopolyploidy, allows these …

Map** the chromatin accessibility landscape of zebrafish embryogenesis at single-cell resolution by SPATAC-seq

K Sun, X Liu, R Xu, C Liu, A Meng, X Lan - Nature Cell Biology, 2024 - nature.com
Currently, the dynamic accessible elements that determine regulatory programs responsible
for the unique identity and function of each cell type during zebrafish embryogenesis lack …