Genomic selection: A tool for accelerating the efficiency of molecular breeding for development of climate-resilient crops

N Budhlakoti, AK Kushwaha, A Rai… - Frontiers in …, 2022 - frontiersin.org
Since the inception of the theory and conceptual framework of genomic selection (GS),
extensive research has been done on evaluating its efficiency for utilization in crop …

Fast-forward breeding for a food-secure world

RK Varshney, A Bohra, M Roorkiwal, R Barmukh… - Trends in Genetics, 2021 - cell.com
Crop production systems need to expand their outputs sustainably to feed a burgeoning
human population. Advances in genome sequencing technologies combined with efficient …

DNNGP, a deep neural network-based method for genomic prediction using multi-omics data in plants

K Wang, MA Abid, A Rasheed, J Crossa, S Hearne… - Molecular Plant, 2023 - cell.com
Genomic prediction is an effective way to accelerate the rate of agronomic trait improvement
in plants. Traditional methods typically use linear regression models with clear assumptions; …

A comparative study of 11 non-linear regression models highlighting autoencoder, DBN, and SVR, enhanced by SHAP importance analysis in soybean branching …

W Zhou, Z Yan, L Zhang - Scientific Reports, 2024 - nature.com
To explore a robust tool for advancing digital breeding practices through an artificial
intelligence-driven phenotype prediction expert system, we undertook a thorough analysis of …

Accelerating crop genetic gains with genomic selection

KP Voss-Fels, M Cooper, BJ Hayes - Theoretical and Applied Genetics, 2019 - Springer
Key message Genomic prediction based on additive genetic effects can accelerate genetic
gain. There are opportunities for further improvement by including non-additive effects that …

Genomic selection: genome-wide prediction in plant improvement

ZA Desta, R Ortiz - Trends in plant science, 2014 - cell.com
Association analysis is used to measure relations between markers and quantitative trait loci
(QTL). Their estimation ignores genes with small effects that trigger underpinning …

Genomic Selection and Association Map** in Rice (Oryza sativa): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number and …

J Spindel, H Begum, D Akdemir, P Virk, B Collard… - PLoS …, 2015 - journals.plos.org
Genomic Selection (GS) is a new breeding method in which genome-wide markers are used
to predict the breeding value of individuals in a breeding population. GS has been shown to …

Genoty**‐by‐sequencing for plant breeding and genetics

JA Poland, TW Rife - The plant genome, 2012 - Wiley Online Library
Rapid advances in “next‐generation” DNA sequencing technology have brought the US
$1000 human (Homo sapiens) genome within reach while providing the raw sequencing …

Next-generation phenoty**: requirements and strategies for enhancing our understanding of genotype–phenotype relationships and its relevance to crop …

JN Cobb, G DeClerck, A Greenberg, R Clark… - Theoretical and Applied …, 2013 - Springer
More accurate and precise phenoty** strategies are necessary to empower high-
resolution linkage map** and genome-wide association studies and for training genomic …

Enhancing genetic gain through genomic selection: from livestock to plants

Y Xu, X Liu, J Fu, H Wang, J Wang, C Huang… - Plant …, 2020 - cell.com
Although long-term genetic gain has been achieved through increasing use of modern
breeding methods and technologies, the rate of genetic gain needs to be accelerated to …