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Toward deep learning sequence–structure co-generation for protein design
C Wang, S Alamdari, C Domingo-Enrich… - Current Opinion in …, 2025 - Elsevier
Highlights•Deep generative models generate proteins to help solve modern-day
challenges.•Most generative models of proteins generate sequences directly or generate …
challenges.•Most generative models of proteins generate sequences directly or generate …
Computational protein design
KI Albanese, S Barbe, S Tagami… - Nature Reviews …, 2025 - nature.com
Combining molecular modelling, machine-learned models and an increasingly detailed
understanding of protein chemistry and physics, computational protein design and human …
understanding of protein chemistry and physics, computational protein design and human …
[HTML][HTML] Challenges and compromises: Predicting unbound antibody structures with deep learning
A Greenshields-Watson, O Vavourakis… - Current Opinion in …, 2025 - Elsevier
Therapeutic antibodies are manufactured, stored and administered in the free state; this
makes understanding the unbound form key to designing and improving development …
makes understanding the unbound form key to designing and improving development …
The Superposition of Diffusion Models Using the It\^ o Density Estimator
The Cambrian explosion of easily accessible pre-trained diffusion models suggests a
demand for methods that combine multiple different pre-trained diffusion models without …
demand for methods that combine multiple different pre-trained diffusion models without …
Scalable emulation of protein equilibrium ensembles with generative deep learning
Following the sequence and structure revolutions, predicting the dynamical mechanisms of
proteins that implement biological function remains an outstanding scientific challenge …
proteins that implement biological function remains an outstanding scientific challenge …
Outsourced diffusion sampling: Efficient posterior inference in latent spaces of generative models
Any well-behaved generative model over a variable $\mathbf {x} $ can be expressed as a
deterministic transformation of an exogenous ('outsourced') Gaussian noise variable …
deterministic transformation of an exogenous ('outsourced') Gaussian noise variable …