Water in nanopores and biological channels: a molecular simulation perspective

CI Lynch, S Rao, MSP Sansom - Chemical reviews, 2020 - ACS Publications
This Review explores the dynamic behavior of water within nanopores and biological
channels in lipid bilayer membranes. We focus on molecular simulation studies, alongside …

Advances in the study of supercooled water

P Gallo, J Bachler, LE Bove, R Böhmer… - The European Physical …, 2021 - Springer
In this review, we report recent progress in the field of supercooled water. Due to its
uniqueness, water presents numerous anomalies with respect to most simple liquids …

Systematic comparison of the structural and dynamic properties of commonly used water models for molecular dynamics simulations

SP Kadaoluwa Pathirannahalage… - Journal of Chemical …, 2021 - ACS Publications
Water is a unique solvent that is ubiquitous in biology and present in a variety of solutions,
mixtures, and materials settings. It therefore forms the basis for all molecular dynamics …

Modeling and simulations of polymers: a roadmap

TE Gartner III, A Jayaraman - Macromolecules, 2019 - ACS Publications
Molecular modeling and simulations are invaluable tools for the polymer science and
engineering community. These computational approaches enable predictions and provide …

Relation between single-molecule properties and phase behavior of intrinsically disordered proteins

GL Dignon, W Zheng, RB Best… - Proceedings of the …, 2018 - National Acad Sciences
Proteins that undergo liquid–liquid phase separation (LLPS) have been shown to play a
critical role in many physiological functions through formation of condensed liquid-like …

Water dispersion interactions strongly influence simulated structural properties of disordered protein states

S Piana, AG Donchev, P Robustelli… - The journal of physical …, 2015 - ACS Publications
Many proteins can be partially or completely disordered under physiological conditions.
Structural characterization of these disordered states using experimental methods can be …

Interfacial Tensions, Solubilities, and Transport Properties of the H2/H2O/NaCl System: A Molecular Simulation Study

WA Van Rooijen, P Habibi, K Xu, P Dey… - Journal of Chemical & …, 2023 - ACS Publications
Data for several key thermodynamic and transport properties needed for technologies using
hydrogen (H2), such as underground H2 storage and H2O electrolysis are scarce or …

Metastable liquid–liquid transition in a molecular model of water

JC Palmer, F Martelli, Y Liu, R Car… - Nature, 2014 - nature.com
Liquid water's isothermal compressibility and isobaric heat capacity, and the magnitude of its
thermal expansion coefficient, increase sharply on cooling below the equilibrium freezing …

[HTML][HTML] Molecular dynamics simulations of the interfacial tension and the solubility of brine/H2/CO2 systems: Implications for underground hydrogen storage

AM Adam, D Bahamon, M Al Kobaisi… - International Journal of …, 2024 - Elsevier
The interfacial tension (IFT) between the reservoir fluids and the solubilities of the injected
hydrogen and cushion gas in the underground brine plays a critical role in the security and …

[HTML][HTML] On the accuracy of the MB-pol many-body potential for water: Interaction energies, vibrational frequencies, and classical thermodynamic and dynamical …

SK Reddy, SC Straight, P Bajaj, C Huy Pham… - The Journal of …, 2016 - pubs.aip.org
The MB-pol many-body potential has recently emerged as an accurate molecular model for
water simulations from the gas to the condensed phase. In this study, the accuracy of MB-pol …