Clinical implications of PTEN loss in prostate cancer

T Jamaspishvili, DM Berman, AE Ross, HI Scher… - Nature Reviews …, 2018‏ - nature.com
Genomic aberrations of the PTEN tumour suppressor gene are among the most common in
prostate cancer. Inactivation of PTEN by deletion or mutation is identified in∼ 20% of …

Epigenetic modulators, modifiers and mediators in cancer aetiology and progression

AP Feinberg, MA Koldobskiy, A Göndör - Nature Reviews Genetics, 2016‏ - nature.com
This year is the tenth anniversary of the publication in this journal of a model suggesting the
existence of'tumour progenitor genes'. These genes are epigenetically disrupted at the …

Molecular map of chronic lymphocytic leukemia and its impact on outcome

BA Knisbacher, Z Lin, CK Hahn, F Nadeu… - Nature …, 2022‏ - nature.com
Recent advances in cancer characterization have consistently revealed marked
heterogeneity, impeding the completion of integrated molecular and clinical maps for each …

Neoantigen vaccine generates intratumoral T cell responses in phase Ib glioblastoma trial

DB Keskin, AJ Anandappa, J Sun, I Tirosh… - Nature, 2019‏ - nature.com
Neoantigens, which are derived from tumour-specific protein-coding mutations, are exempt
from central tolerance, can generate robust immune responses, and can function as bona …

Pan-cancer analysis of whole genomes

Nature, 2020‏ - nature.com
Cancer is driven by genetic change, and the advent of massively parallel sequencing has
enabled systematic documentation of this variation at the whole-genome scale,–. Here we …

Uncovering novel mutational signatures by de novo extraction with SigProfilerExtractor

SMA Islam, M Díaz-Gay, Y Wu, M Barnes, R Vangara… - Cell genomics, 2022‏ - cell.com
Mutational signature analysis is commonly performed in cancer genomic studies. Here, we
present SigProfilerExtractor, an automated tool for de novo extraction of mutational …

Scalable whole-exome sequencing of cell-free DNA reveals high concordance with metastatic tumors

VA Adalsteinsson, G Ha, SS Freeman… - Nature …, 2017‏ - nature.com
Whole-exome sequencing of cell-free DNA (cfDNA) could enable comprehensive profiling of
tumors from blood but the genome-wide concordance between cfDNA and tumor biopsies is …

[HTML][HTML] Patterns of somatic structural variation in human cancer genomes

Y Li, ND Roberts, JA Wala, O Shapira, SE Schumacher… - Nature, 2020‏ - nature.com
A key mutational process in cancer is structural variation, in which rearrangements delete,
amplify or reorder genomic segments that range in size from kilobases to whole …

An immunogenic personal neoantigen vaccine for patients with melanoma

PA Ott, Z Hu, DB Keskin, SA Shukla, J Sun, DJ Bozym… - Nature, 2017‏ - nature.com
Effective anti-tumour immunity in humans has been associated with the presence of T cells
directed at cancer neoantigens, a class of HLA-bound peptides that arise from tumour …

Personal neoantigen vaccines induce persistent memory T cell responses and epitope spreading in patients with melanoma

Z Hu, DE Leet, RL Allesøe, G Oliveira, S Li… - Nature medicine, 2021‏ - nature.com
Personal neoantigen vaccines have been envisioned as an effective approach to induce,
amplify and diversify antitumor T cell responses. To define the long-term effects of such a …