Polyploidy before and after domestication of crop species

T Akagi, K Jung, K Masuda, KK Shimizu - Current Opinion in Plant Biology, 2022 - Elsevier
Recent advances in the genomics of polyploid species answer some of the long-standing
questions about the role of polyploidy in crop species. Here, we summarize the current …

Why should we study plant sex chromosomes?

D Charlesworth, A Harkess - The Plant Cell, 2024 - academic.oup.com
Understanding plant sex chromosomes involves studying interactions between
developmental and physiological genetics, genome evolution, and evolutionary ecology. We …

Recurrent neo-sex chromosome evolution in kiwifruit

T Akagi, E Varkonyi-Gasic, K Shirasawa, A Catanach… - Nature Plants, 2023 - nature.com
Sex chromosome evolution is thought to be tightly associated with the acquisition and
maintenance of sexual dimorphisms. Plant sex chromosomes have evolved independently …

A CLAVATA3-like Gene Acts as a Gynoecium Suppression Function in White Campion

Y Kazama, M Kitoh, T Kobayashi, K Ishii… - Molecular Biology …, 2022 - academic.oup.com
How do separate sexes originate and evolve? Plants provide many opportunities to address
this question as they have diverse mating systems and separate sexes (dioecy) that evolved …

Ongoing Rapid Evolution of a Post-Y Region Revealed by Chromosome-Scale Genome Assembly of a Hexaploid Monoecious Persimmon (Diospyros kaki)

A Horiuchi, K Masuda, K Shirasawa… - Molecular Biology …, 2023 - academic.oup.com
Plants have evolved sex chromosomes independently in many lineages, and loss of
separate sexes can also occur. In this study, we assembled a monoecious recently …

Genome assembly of autotetraploid Actinidia arguta highlights adaptive evolution and enables dissection of important economic traits

XM Lu, XF Yu, GQ Li, MH Qu, H Wang, C Liu… - Plant …, 2024 - cell.com
Actinidia arguta, the most widely distributed Actinidia species and the second cultivated
species in the genus, can be distinguished from the currently cultivated Actinidia chinensis …

Transcriptomic interpretation on explainable AI-guided intuition uncovers premonitory reactions of disordering fate in persimmon fruit

K Masuda, E Kuwada, M Suzuki, T Suzuki… - Plant and Cell …, 2023 - academic.oup.com
Deep neural network (DNN) techniques, as an advanced machine learning framework, have
allowed various image diagnoses in plants, which often achieve better prediction …

Identification and analysis of miRNAs differentially expressed in male and female Trichosanthes kirilowii maxim

X Hu, H Song, N Li, C Hao, B Zhang, X Li, J **n… - BMC genomics, 2023 - Springer
Trichosanthes kirilowii Maxim.(TK) is a dioecious plant in the Cucurbitaceae family of which
different sexes have separate medicinal uses. We used Illumina high-throughput …

Phylogenomics resolves key relationships in Rumex and uncovers a dynamic history of independently evolving sex chromosomes

MS Hibbins, JL Rifkin, BI Choudhury… - Evolution …, 2024 - academic.oup.com
Sex chromosomes have evolved independently many times across eukaryotes. Despite a
considerable body of literature on sex chromosome evolution, the causes and …

[HTML][HTML] Genome-wide identification and analysis of the molecular evolution and expression of type-A response regulator genes in Populus deltoids

J Lu, S Wei, T Yin, Y Chen - Industrial Crops and Products, 2023 - Elsevier
Cytokinins have vital effects on various plant development-related processes. Type-A
response regulators (RRs) are among the most important regulators in the cytokinin …