Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity

JP Shaffer, LF Nothias, LR Thompson, JG Sanders… - Nature …, 2022 - nature.com
Despite advances in sequencing, lack of standardization makes comparisons across studies
challenging and hampers insights into the structure and function of microbial communities …

Interpreting beta‐diversity components over time to conserve metacommunities in highly dynamic ecosystems

A Ruhí, T Datry, JL Sabo - Conservation Biology, 2017 - Wiley Online Library
The concept of metacommunity (ie, a set of local communities linked by dispersal) has
gained great popularity among community ecologists. However, metacommunity research …

A communal catalogue reveals Earth's multiscale microbial diversity

LR Thompson, JG Sanders, D McDonald, A Amir… - Nature, 2017 - nature.com
Our growing awareness of the microbial world's importance and diversity contrasts starkly
with our limited understanding of its fundamental structure. Despite recent advances in DNA …

Measuring species diversity in the tropics: a review of methodological approaches and framework for future studies

CE Moreno, JM Calderón‐Patrón… - Biotropica, 2018 - Wiley Online Library
The analysis of species diversity has benefited from multiple methodological approaches
that are changing not only the way we measure biodiversity, but also our general …

Eutrophication increases the similarity of cyanobacterial community features in lakes and reservoirs

J Zuo, P **ao, J Heino, F Tan, J Soininen, H Chen… - Water Research, 2024 - Elsevier
Eutrophication of inland waters is a mostly anthropogenic phenomenon impacting aquatic
biodiversity worldwide, and might change biotic community structure and ecosystem …

Land-use intensification causes multitrophic homogenization of grassland communities

MM Gossner, TM Lewinsohn, T Kahl, F Grassein… - Nature, 2016 - nature.com
Land-use intensification is a major driver of biodiversity loss,. Alongside reductions in local
species diversity, biotic homogenization at larger spatial scales is of great concern for …

Interpreting the replacement and richness difference components of beta diversity

P Legendre - Global Ecology and Biogeography, 2014 - Wiley Online Library
Aim The variation in species composition among sites, or beta diversity, can be decomposed
into replacement and richness difference. A debate is ongoing in the literature concerning …

BAT–Biodiversity Assessment Tools, an R package for the measurement and estimation of alpha and beta taxon, phylogenetic and functional diversity

P Cardoso, F Rigal, JC Carvalho - Methods in Ecology and …, 2015 - Wiley Online Library
Novel algorithms have been recently developed to estimate alpha and partition beta
diversity in all their dimensions (taxon, phylogenetic and functional diversity–TD, PD and …

How pervasive is biotic homogenization in human‐modified tropical forest landscapes?

RRC Solar, J Barlow, J Ferreira, E Berenguer… - Ecology …, 2015 - Wiley Online Library
Land‐cover change and ecosystem degradation may lead to biotic homogenization, yet our
understanding of this phenomenon over large spatial scales and different biotic groups …

Comparing methods to separate components of beta diversity

A Baselga, F Leprieur - Methods in Ecology and Evolution, 2015 - Wiley Online Library
Two alternative frameworks have been proposed to partition compositional dissimilarity into
replacement and nestedness‐resultant component or into replacement and richness …