Computational methods for electron tomography
JJ Fernandez - Micron, 2012 - Elsevier
Electron tomography (ET) has emerged as a powerful technique to address fundamental
questions in molecular and cellular biology. It makes possible visualization of the molecular …
questions in molecular and cellular biology. It makes possible visualization of the molecular …
Markov random field based automatic image alignment for electron tomography
We present a method for automatic full-precision alignment of the images in a tomographic
tilt series. Full-precision automatic alignment of cryo electron microscopy images has …
tilt series. Full-precision automatic alignment of cryo electron microscopy images has …
Alignment of cryo-electron tomography datasets
Data acquisition of cryo-electron tomography (CET) samples described in previous chapters
involves relatively imprecise mechanical motions: the tilt series has shifts, rotations, and …
involves relatively imprecise mechanical motions: the tilt series has shifts, rotations, and …
Computational resources for cryo-electron tomography in Bsoft
The Bsoft package [Heymann, JB, Belnap, DM, 2007. Bsoft: image processing and
molecular modeling for electron microscopy. J. Struct. Biol. 157, 3–18] has been enhanced …
molecular modeling for electron microscopy. J. Struct. Biol. 157, 3–18] has been enhanced …
A novel fully automatic scheme for fiducial marker-based alignment in electron tomography
Although the topic of fiducial marker-based alignment in electron tomography (ET) has been
widely discussed for decades, alignment without human intervention remains a difficult …
widely discussed for decades, alignment without human intervention remains a difficult …
Markerauto2: A fast and robust fully automatic fiducial marker-based tilt series alignment software for electron tomography
Cryoelectron tomography (cryo-ET) has become an indispensable technology for visualizing
in situ biological ultrastructures, where the tilt series alignment is the key step to obtain a …
in situ biological ultrastructures, where the tilt series alignment is the key step to obtain a …
A marker-free automatic alignment method based on scale-invariant features
In electron tomography, alignment accuracy is critical for high-resolution reconstruction.
However, the automatic alignment of a tilt series without fiducial markers remains a …
However, the automatic alignment of a tilt series without fiducial markers remains a …
Autom: a novel automatic platform for electron tomography reconstruction
We have developed a software package towards automatic electron tomography (ET):
Automatic Tomography (AuTom). The presented package has the following characteristics …
Automatic Tomography (AuTom). The presented package has the following characteristics …
Refinement procedure for the image alignment in high-resolution electron tomography
High-resolution electron tomography from a tilt series of transmission electron microscopy
images requires an accurate image alignment procedure in order to maximise the resolution …
images requires an accurate image alignment procedure in order to maximise the resolution …
Fast projection matching for X-ray tomography
X-ray 3D tomographic techniques are powerful tools for investigating the morphology and
internal structures of specimens. A common strategy for obtaining 3D tomography is to …
internal structures of specimens. A common strategy for obtaining 3D tomography is to …