Semantic similarity in biomedical ontologies

C Pesquita, D Faria, AO Falcao, P Lord… - PLoS computational …, 2009 - journals.plos.org
In recent years, ontologies have become a mainstream topic in biomedical research. When
biological entities are described using a common schema, such as an ontology, they can be …

Protein–protein interactions: detection, reliability assessment and applications

X Peng, J Wang, W Peng, FX Wu… - Briefings in …, 2017 - academic.oup.com
Protein–protein interactions (PPIs) participate in all important biological processes in living
organisms, such as catalyzing metabolic reactions, DNA replication, DNA transcription …

[图书][B] Semantic similarity from natural language and ontology analysis

S Harispe, S Ranwez, J Montmain - 2022 - books.google.com
Artificial Intelligence federates numerous scientific fields in the aim of develo** machines
able to assist human operators performing complex treatments---most of which demand high …

Computational approaches for detecting protein complexes from protein interaction networks: a survey

X Li, M Wu, CK Kwoh, SK Ng - BMC genomics, 2010 - Springer
Background Most proteins form macromolecular complexes to perform their biological
functions. However, experimentally determined protein complex data, especially of those …

Semantic similarity analysis of protein data: assessment with biological features and issues

PH Guzzi, M Mina, C Guerra… - Briefings in …, 2012 - academic.oup.com
The integration of proteomics data with biological knowledge is a recent trend in
bioinformatics. A lot of biological information is available and is spread on different sources …

The ocean sampling day consortium

A Kopf, M Bicak, R Kottmann, J Schnetzer, I Kostadinov… - Gigascience, 2015 - Springer
Abstract Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial
Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine …

A fast hierarchical clustering algorithm for functional modules discovery in protein interaction networks

J Wang, M Li, J Chen, Y Pan - IEEE/ACM Transactions on …, 2010 - ieeexplore.ieee.org
As advances in the technologies of predicting protein interactions, huge data sets portrayed
as networks have been available. Identification of functional modules from such networks is …

[图书][B] Protein interaction networks: computational analysis

A Zhang - 2009 - books.google.com
The analysis of protein-protein interactions is fundamental to the understanding of cellular
organization, processes, and functions. Recent large-scale investigations of protein-protein …

[图书][B] Biomolecular networks: methods and applications in systems biology

AY Zomaya, Y Pan - 2009 - books.google.com
Alternative techniques and tools for analyzing biomolecular networks With the recent rapid
advances in molecular biology, high-throughput experimental methods have resulted in …

Construction and application of dynamic protein interaction network based on time course gene expression data

J Wang, X Peng, M Li, Y Pan - Proteomics, 2013 - Wiley Online Library
In recent years, researchers have tried to inject dynamic information into static protein
interaction networks (PIN s). The paper first proposes a three‐sigma method to identify …