The evolving species concepts used for yeasts: from phenotypes and genomes to speciation networks

T Boekhout, MC Aime, D Begerow, T Gabaldón… - Fungal diversity, 2021 - Springer
Here we review how evolving species concepts have been applied to understand yeast
diversity. Initially, a phenotypic species concept was utilized taking into consideration …

Recombination suppression and evolutionary strata around mating‐type loci in fungi: documenting patterns and understanding evolutionary and mechanistic causes

FE Hartmann, M Duhamel, F Carpentier… - New …, 2021 - Wiley Online Library
Genomic regions determining sexual compatibility often display recombination suppression,
as occurs in sex chromosomes, plant self‐incompatibility loci and fungal mating‐type loci …

Three problems in the genetics of speciation by selection

D Schluter, LH Rieseberg - Proceedings of the National …, 2022 - National Acad Sciences
Speciation is the process by which barriers to gene flow evolve between populations.
Although we now know that speciation is largely driven by natural selection, knowledge of …

Genomic factors shape carbon and nitrogen metabolic niche breadth across Saccharomycotina yeasts

DA Opulente, AL LaBella, MC Harrison, JF Wolters… - Science, 2024 - science.org
Organisms exhibit extensive variation in ecological niche breadth, from very narrow
(specialists) to very broad (generalists). Two general paradigms have been proposed to …

Biases in demographic modeling affect our understanding of recent divergence

P Momigliano, AB Florin, J Merilä - Molecular biology and …, 2021 - academic.oup.com
Testing among competing demographic models of divergence has become an important
component of evolutionary research in model and non-model organisms. However, the …

Does selection favour the maintenance of porous species boundaries?

TG Barraclough - Journal of Evolutionary Biology, 2024 - academic.oup.com
The endpoint of speciation has been viewed as complete isolation and the absence of gene
flow between species. If the influx of genes from another species is maladaptive because …

Dynamics of transposable element accumulation in the non-recombining regions of mating-type chromosomes in anther-smut fungi

M Duhamel, ME Hood… - Nature …, 2023 - nature.com
In the absence of recombination, the number of transposable elements (TEs) increases due
to less efficient selection, but the dynamics of such TE accumulations are not well …

Rapid and Predictable Evolution of Admixed Populations Between Two Drosophila Species Pairs

DR Matute, AA Comeault, E Earley… - Genetics, 2020 - academic.oup.com
In this article, Matute et al. report an experiment in which they generated eight interspecific
admixed populations using two species pairs of Drosophila. They found that in both species …

Using structural variants to understand the ecological and evolutionary dynamics of fungal plant pathogens

FE Hartmann - New Phytologist, 2022 - Wiley Online Library
Deletions, duplications, insertions, inversions and translocations are commonly referred to
as structural variants (SVs). Fungal plant pathogens have compact genomes, facilitating the …

Evolution and adaptation of forest and crop pathogens in the Anthropocene

P Hessenauer, N Feau, U Gill… - …, 2021 - Am Phytopath Society
Anthropocene marks the era when human activity is making a significant impact on earth, its
ecological and biogeographical systems. The domestication and intensification of …