Abiotic stress responses and microbe-mediated mitigation in plants: the omics strategies
Abiotic stresses are the foremost limiting factors for agricultural productivity. Crop plants
need to cope up adverse external pressure created by environmental and edaphic …
need to cope up adverse external pressure created by environmental and edaphic …
Metagenomic analyses: past and future trends
C Simon, R Daniel - Applied and environmental microbiology, 2011 - Am Soc Microbiol
Metagenomics has revolutionized microbiology by paving the way for a cultivation-
independent assessment and exploitation of microbial communities present in complex …
independent assessment and exploitation of microbial communities present in complex …
Critical evaluation of two primers commonly used for amplification of bacterial 16S rRNA genes
JA Frank, CI Reich, S Sharma… - Applied and …, 2008 - Am Soc Microbiol
ABSTRACT rRNA-based studies, which have become the most common method for
assessing microbial communities, rely upon faithful amplification of the corresponding genes …
assessing microbial communities, rely upon faithful amplification of the corresponding genes …
Global patterns in bacterial diversity
CA Lozupone, R Knight - Proceedings of the National …, 2007 - National Acad Sciences
Microbes are difficult to culture. Consequently, the primary source of information about a
fundamental evolutionary topic, life's diversity, is the environmental distribution of gene …
fundamental evolutionary topic, life's diversity, is the environmental distribution of gene …
High throughput sequencing methods and analysis for microbiome research
High-throughput sequencing technology is rapidly improving in quality, speed and cost. It is
therefore becoming more widely used to study whole communities of prokaryotes in many …
therefore becoming more widely used to study whole communities of prokaryotes in many …
[HTML][HTML] Combining metagenomics, metatranscriptomics and viromics to explore novel microbial interactions: towards a systems-level understanding of human …
S Bikel, A Valdez-Lara, F Cornejo-Granados… - Computational and …, 2015 - Elsevier
The advances in experimental methods and the development of high performance
bioinformatic tools have substantially improved our understanding of microbial communities …
bioinformatic tools have substantially improved our understanding of microbial communities …
Amplification methods bias metagenomic libraries of uncultured single-stranded and double-stranded DNA viruses
Investigation of viruses in the environment often requires the amplification of viral DNA
before sequencing of viral metagenomes. In this study, two of the most widely used …
before sequencing of viral metagenomes. In this study, two of the most widely used …
Assessment of metagenomic assembly using simulated next generation sequencing data
Due to the complexity of the protocols and a limited knowledge of the nature of microbial
communities, simulating metagenomic sequences plays an important role in testing the …
communities, simulating metagenomic sequences plays an important role in testing the …
Uncultured archaea in deep marine subsurface sediments: have we caught them all?
A Teske, KB Sørensen - The ISME journal, 2008 - academic.oup.com
Deep marine subsurface sediments represent a novel archaeal biosphere with unknown
physiology; the sedimentary subsurface harbors numerous novel phylogenetic lineages of …
physiology; the sedimentary subsurface harbors numerous novel phylogenetic lineages of …
The functional potential of high Arctic permafrost revealed by metagenomic sequencing, qPCR and microarray analyses
The fate of the carbon stocked in permafrost following global warming and permafrost thaw
is of major concern in view of the potential for increased CH4 and CO2 emissions from these …
is of major concern in view of the potential for increased CH4 and CO2 emissions from these …