Gut microbiome, big data and machine learning to promote precision medicine for cancer
The gut microbiome has been implicated in cancer in several ways, as specific microbial
signatures are known to promote cancer development and influence safety, tolerability and …
signatures are known to promote cancer development and influence safety, tolerability and …
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
To the Editor—Rapid advances in DNA-sequencing and bioinformatics technologies in the
past two decades have substantially improved understanding of the microbial world. This …
past two decades have substantially improved understanding of the microbial world. This …
RESCRIPt: Reproducible sequence taxonomy reference database management
Nucleotide sequence and taxonomy reference databases are critical resources for
widespread applications including marker-gene and metagenome sequencing for …
widespread applications including marker-gene and metagenome sequencing for …
[PDF][PDF] QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
We present QIIME 2, an opensource microbiome data science platform accessible to users
spanning the microbiome research ecosystem, from scientists and engineers to clinicians …
spanning the microbiome research ecosystem, from scientists and engineers to clinicians …
QIIME 2 enables comprehensive end‐to‐end analysis of diverse microbiome data and comparative studies with publicly available data
QIIME 2 is a completely re‐engineered microbiome bioinformatics platform based on the
popular QIIME platform, which it has replaced. QIIME 2 facilitates comprehensive and fully …
popular QIIME platform, which it has replaced. QIIME 2 facilitates comprehensive and fully …
Critical review of 16S rRNA gene sequencing workflow in microbiome studies: From primer selection to advanced data analysis
A Regueira‐Iglesias, C Balsa‐Castro… - Molecular Oral …, 2023 - Wiley Online Library
The multi‐batch reanalysis approach of jointly reevaluating gene/genome sequences from
different works has gained particular relevance in the literature in recent years. The large …
different works has gained particular relevance in the literature in recent years. The large …
A catalogue of 1,167 genomes from the human gut archaeome
The human gut microbiome plays an important role in health, but its archaeal diversity
remains largely unexplored. In the present study, we report the analysis of 1,167 …
remains largely unexplored. In the present study, we report the analysis of 1,167 …
q2-longitudinal: longitudinal and paired-sample analyses of microbiome data
Studies of host-associated and environmental microbiomes often incorporate longitudinal
sampling or paired samples in their experimental design. Longitudinal sampling provides …
sampling or paired samples in their experimental design. Longitudinal sampling provides …
Bacterial induction of B cell senescence promotes age-related changes in the gut microbiota
S Kawamoto, K Uemura, N Hori, L Takayasu… - Nature Cell …, 2023 - nature.com
The elucidation of the mechanisms of ageing and the identification of methods to control it
have long been anticipated. Recently, two factors associated with ageing—the accumulation …
have long been anticipated. Recently, two factors associated with ageing—the accumulation …
Essential hypertension is associated with changes in gut microbial metabolic pathways: a multisite analysis of ambulatory blood pressure
Recent evidence supports a role for the gut microbiota in hypertension, but whether
ambulatory blood pressure is associated with gut microbiota and their metabolites remains …
ambulatory blood pressure is associated with gut microbiota and their metabolites remains …