Opportunities and obstacles for deep learning in biology and medicine

T Ching, DS Himmelstein… - Journal of the …, 2018 - royalsocietypublishing.org
Deep learning describes a class of machine learning algorithms that are capable of
combining raw inputs into layers of intermediate features. These algorithms have recently …

Neural natural language processing for unstructured data in electronic health records: a review

I Li, J Pan, J Goldwasser, N Verma, WP Wong… - Computer Science …, 2022 - Elsevier
Electronic health records (EHRs), digital collections of patient healthcare events and
observations, are ubiquitous in medicine and critical to healthcare delivery, operations, and …

Large language models are few-shot clinical information extractors

M Agrawal, S Hegselmann, H Lang, Y Kim… - arxiv preprint arxiv …, 2022 - arxiv.org
A long-running goal of the clinical NLP community is the extraction of important variables
trapped in clinical notes. However, roadblocks have included dataset shift from the general …

[HTML][HTML] A comparison of word embeddings for the biomedical natural language processing

Y Wang, S Liu, N Afzal, M Rastegar-Mojarad… - Journal of biomedical …, 2018 - Elsevier
Background Word embeddings have been prevalently used in biomedical Natural
Language Processing (NLP) applications due to the ability of the vector representations …

Deep learning in clinical natural language processing: a methodical review

S Wu, K Roberts, S Datta, J Du, Z Ji, Y Si… - Journal of the …, 2020 - academic.oup.com
Objective This article methodically reviews the literature on deep learning (DL) for natural
language processing (NLP) in the clinical domain, providing quantitative analysis to answer …

[HTML][HTML] An empirical evaluation of prompting strategies for large language models in zero-shot clinical natural language processing: algorithm development and …

S Sivarajkumar, M Kelley… - JMIR Medical …, 2024 - medinform.jmir.org
Background Large language models (LLMs) have shown remarkable capabilities in natural
language processing (NLP), especially in domains where labeled data are scarce or …

A clinical text classification paradigm using weak supervision and deep representation

Y Wang, S Sohn, S Liu, F Shen, L Wang… - BMC medical informatics …, 2019 - Springer
Background Automatic clinical text classification is a natural language processing (NLP)
technology that unlocks information embedded in clinical narratives. Machine learning …

Detection of hate speech using bert and hate speech word embedding with deep model

H Saleh, A Alhothali, K Moria - Applied Artificial Intelligence, 2023 - Taylor & Francis
There is an increased demand for detecting online hate speech, especially with the recent
changing policies of hate content and free-of-speech right of online social media platforms …

Clinical named entity recognition using deep learning models

Y Wu, M Jiang, J Xu, D Zhi, H Xu - AMIA annual symposium …, 2018 - pmc.ncbi.nlm.nih.gov
Clinical Named Entity Recognition (NER) is a critical natural language processing (NLP)
task to extract important concepts (named entities) from clinical narratives. Researchers …

Semeval-2023 task 7: Multi-evidence natural language inference for clinical trial data

M Jullien, M Valentino, H Frost, P O'Regan… - arxiv preprint arxiv …, 2023 - arxiv.org
This paper describes the results of SemEval 2023 task 7--Multi-Evidence Natural Language
Inference for Clinical Trial Data (NLI4CT)--consisting of 2 tasks, a Natural Language …