Satellite DNA: an evolving topic

MA Garrido-Ramos - Genes, 2017 - mdpi.com
Satellite DNA represents one of the most fascinating parts of the repetitive fraction of the
eukaryotic genome. Since the discovery of highly repetitive tandem DNA in the 1960s, a lot …

How important are transposons for plant evolution?

D Lisch - Nature Reviews Genetics, 2013 - nature.com
For decades, transposable elements have been known to produce a wide variety of changes
in plant gene expression and function. This has led to the idea that transposable element …

A high-quality genome assembly highlights rye genomic characteristics and agronomically important genes

G Li, L Wang, J Yang, H He, H **, X Li, T Ren, Z Ren… - Nature …, 2021 - nature.com
Rye is a valuable food and forage crop, an important genetic resource for wheat and triticale
improvement and an indispensable material for efficient comparative genomic studies in …

LTR_retriever: a highly accurate and sensitive program for identification of long terminal repeat retrotransposons

S Ou, N Jiang - Plant physiology, 2018 - academic.oup.com
Long terminal repeat retrotransposons (LTR-RTs) are prevalent in plant genomes. The
identification of LTR-RTs is critical for achieving high-quality gene annotation. Based on the …

Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza

JC Stein, Y Yu, D Copetti, DJ Zwickl, L Zhang… - Nature …, 2018 - nature.com
The genus Oryza is a model system for the study of molecular evolution over time scales
ranging from a few thousand to 15 million years. Using 13 reference genomes spanning the …

Dynamics of genome size evolution in birds and mammals

A Kapusta, A Suh, C Feschotte - Proceedings of the …, 2017 - National Acad Sciences
Genome size in mammals and birds shows remarkably little interspecific variation compared
with other taxa. However, genome sequencing has revealed that many mammal and bird …

The Norway spruce genome sequence and conifer genome evolution

B Nystedt, NR Street, A Wetterbom, A Zuccolo, YC Lin… - Nature, 2013 - nature.com
Conifers have dominated forests for more than 200 million years and are of huge ecological
and economic importance. Here we present the draft assembly of the 20-gigabase genome …

Impact of transposable elements on genome structure and evolution in bread wheat

T Wicker, H Gundlach, M Spannagl, C Uauy, P Borrill… - Genome biology, 2018 - Springer
Abstract Background Transposable elements (TEs) are major components of large plant
genomes and main drivers of genome evolution. The most recent assembly of hexaploid …

Evolution of plant genome architecture

JF Wendel, SA Jackson, BC Meyers, RA Wing - Genome biology, 2016 - Springer
We have witnessed an explosion in our understanding of the evolution and structure of plant
genomes in recent years. Here, we highlight three important emergent realizations:(1) that …

The contributions of transposable elements to the structure, function, and evolution of plant genomes

JL Bennetzen, H Wang - Annual review of plant biology, 2014 - annualreviews.org
Transposable elements (TEs) are the key players in generating genomic novelty by a
combination of the chromosome rearrangements they cause and the genes that come under …