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Opportunities and challenges for ChatGPT and large language models in biomedicine and health
ChatGPT has drawn considerable attention from both the general public and domain experts
with its remarkable text generation capabilities. This has subsequently led to the emergence …
with its remarkable text generation capabilities. This has subsequently led to the emergence …
A survey on recent advances in named entity recognition
Named Entity Recognition seeks to extract substrings within a text that name real-world
objects and to determine their type (for example, whether they refer to persons or …
objects and to determine their type (for example, whether they refer to persons or …
Advancing entity recognition in biomedicine via instruction tuning of large language models
Abstract Motivation Large Language Models (LLMs) have the potential to revolutionize the
field of Natural Language Processing, excelling not only in text generation and reasoning …
field of Natural Language Processing, excelling not only in text generation and reasoning …
PubTator 3.0: an AI-powered literature resource for unlocking biomedical knowledge
Abstract PubTator 3.0 (https://www. ncbi. nlm. nih. gov/research/pubtator3/) is a biomedical
literature resource using state-of-the-art AI techniques to offer semantic and relation …
literature resource using state-of-the-art AI techniques to offer semantic and relation …
The overview of the BioRED (Biomedical Relation Extraction Dataset) track at BioCreative VIII
Abstract The BioRED track at BioCreative VIII calls for a community effort to identify,
semantically categorize, and highlight the novelty factor of the relationships between …
semantically categorize, and highlight the novelty factor of the relationships between …
HunFlair2 in a cross-corpus evaluation of biomedical named entity recognition and normalization tools
Motivation With the exponential growth of the life sciences literature, biomedical text mining
(BTM) has become an essential technology for accelerating the extraction of insights from …
(BTM) has become an essential technology for accelerating the extraction of insights from …
Multi-head CRF classifier for biomedical multi-class named entity recognition on Spanish clinical notes
The identification of medical concepts from clinical narratives has a large interest in the
biomedical scientific community due to its importance in treatment improvements or drug …
biomedical scientific community due to its importance in treatment improvements or drug …
EnzChemRED, a rich enzyme chemistry relation extraction dataset
Expert curation is essential to capture knowledge of enzyme functions from the scientific
literature in FAIR open knowledgebases but cannot keep pace with the rate of new …
literature in FAIR open knowledgebases but cannot keep pace with the rate of new …
[HTML][HTML] Augmenting biomedical named entity recognition with general-domain resources
Objective Training a neural network-based biomedical named entity recognition (BioNER)
model usually requires extensive and costly human annotations. While several studies have …
model usually requires extensive and costly human annotations. While several studies have …
Utsa-nlp at chemotimelines 2024: Evaluating instruction-tuned language models for temporal relation extraction
This paper presents our approach for the 2024 ChemoTimelines shared task. Specifically,
we explored using Large Language Models (LLMs) for temporal relation extraction. We …
we explored using Large Language Models (LLMs) for temporal relation extraction. We …