[HTML][HTML] Modeling brain dysconnectivity in rodents

A Gozzi, V Zerbi - Biological Psychiatry, 2023 - Elsevier
Altered or atypical functional connectivity as measured with functional magnetic resonance
imaging (fMRI) is a hallmark feature of brain connectopathy in psychiatric, developmental …

Rodent Automated Bold Improvement of EPI Sequences (RABIES): A standardized image processing and data quality platform for rodent fMRI

G Desrosiers-Gregoire, GA Devenyi, J Grandjean… - bioRxiv, 2022 - biorxiv.org
Functional magnetic resonance imaging (fMRI) in rodents holds great potential for
advancing our understanding of brain networks. However, rodent fMRI lags the human …

Hybrid fiber optic-fMRI for multimodal cell-specific recording and manipulation of neural activity in rodents

HI Ioanas, F Schlegel, Z Skachokova… - …, 2022 - spiedigitallibrary.org
Significance: Multiscale imaging holds particular relevance to neuroscience, where it helps
integrate the cellular and molecular biological scale, which is most accessible to …

Whole-brain opto-fMRI map of mouse VTA dopaminergic activation reflects structural projections with small but significant deviations

HI Ioanas, BJ Saab, M Rudin - Translational Psychiatry, 2022 - nature.com
Ascending dopaminergic projections from neurons located in the Ventral Tegmental Area
(VTA) are key to the etiology, dysfunction, and control of motivation, learning, and addiction …

A standardized image processing and data quality platform for rodent fMRI

G Desrosiers-Grégoire, GA Devenyi… - Nature …, 2024 - nature.com
Functional magnetic resonance imaging in rodents holds great potential for advancing our
understanding of brain networks. Unlike the human community, there remains no …

Simultaneous single-cell calcium imaging of neuronal population activity and brain-wide BOLD fMRI

RLEM Ubaghs, R Boehringer, M Marks, HK Hesse… - bioRxiv, 2023 - biorxiv.org
Abstract Blood Oxygen Level-Dependent (BOLD) functional Magnetic Resonance Imaging
(fMRI) allows for non-invasive, indirect recordings of neural activity across the whole brain in …

[HTML][HTML] An optimized registration workflow and standard geometric space for small animal brain imaging

HI Ioanas, M Marks, V Zerbi, MF Yanik, M Rudin - NeuroImage, 2021 - Elsevier
The reliability of scientific results critically depends on reproducible and transparent data
processing. Cross-subject and cross-study comparability of imaging data in general, and …

The ANTsX Ecosystem for Map** the Mouse Brain

NJ Tustison, M Chen, FN Kronman, JT Duda, C Gamlin… - bioRxiv, 2024 - biorxiv.org
Precision map** techniques coupled with high resolution image acquisition of the mouse
brain permit the study of the spatial organization of gene expression and their mutual …

Neuroimaging article reexecution and reproduction assessment system

HI Ioanas, A Macdonald, YO Halchenko - Frontiers in …, 2024 - frontiersin.org
The value of research articles is increasingly contingent on complex data analysis results
which substantiate their claims. Compared to data production, data analysis more readily …

An automated open-source workflow for standards-compliant integration of small animal magnetic resonance imaging data

HI Ioanas, M Marks, CM Garin, M Dhenain… - Frontiers in …, 2020 - frontiersin.org
Large-scale research integration is contingent on seamless access to data in standardized
formats. Standards enable researchers to understand external experiment structures, pool …