Exosomes in bodily fluids are a highly stable resource of disease biomarkers

S Boukouris, S Mathivanan - PROTEOMICS–Clinical …, 2015 - Wiley Online Library
Biomarkers are measurable indicators of a biological state. As our understanding of
diseases meliorates, it is generally accepted that early diagnosis renders the best chance to …

The size of the human proteome: the width and depth

EA Ponomarenko, EV Poverennaya… - … journal of analytical …, 2016 - Wiley Online Library
This work discusses bioinformatics and experimental approaches to explore the human
proteome, a constellation of proteins expressed in different tissues and organs. As the …

Recent progress in pancreatic cancer

CL Wolfgang, JM Herman, DA Laheru… - CA: a cancer journal …, 2013 - Wiley Online Library
Answer questions and earn CME/CNE Pancreatic cancer is currently one of the deadliest of
the solid malignancies. However, surgery to resect neoplasms of the pancreas is safer and …

Selected reaction monitoring–based proteomics: workflows, potential, pitfalls and future directions

P Picotti, R Aebersold - Nature methods, 2012 - nature.com
Selected reaction monitoring (SRM) is a targeted mass spectrometry technique that is
emerging in the field of proteomics as a complement to untargeted shotgun methods. SRM is …

Ras in cancer and developmental diseases

A Fernández-Medarde, E Santos - Genes & cancer, 2011 - journals.sagepub.com
Somatic, gain-of-function mutations in ras genes were the first specific genetic alterations
identified in human cancer about 3 decades ago. Studies during the last quarter century …

[HTML][HTML] Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach

SA Carr, SE Abbatiello, BL Ackermann… - Molecular & Cellular …, 2014 - Elsevier
Adoption of targeted mass spectrometry (MS) approaches such as multiple reaction
monitoring (MRM) to study biological and biomedical questions is well underway in the …

Proteomic analysis of exosomes from mutant KRAS colon cancer cells identifies intercellular transfer of mutant KRAS

MD Beckler, JN Higginbotham, JL Franklin… - Molecular & cellular …, 2013 - mcponline.org
Activating mutations in KRAS occur in 30% to 40% of colorectal cancers. How mutant KRAS
alters cancer cell behavior has been studied intensively, but non-cell autonomous effects of …

Fast, sensitive detection of protein homologs using deep dense retrieval

L Hong, Z Hu, S Sun, X Tang, J Wang, Q Tan… - Nature …, 2024 - nature.com
The identification of protein homologs in large databases using conventional methods, such
as protein sequence comparison, often misses remote homologs. Here, we offer an ultrafast …

Quantitative analysis of peptides and proteins in biomedicine by targeted mass spectrometry

MA Gillette, SA Carr - Nature methods, 2013 - nature.com
Targeted mass spectrometry (MS) is becoming widely used in academia and in
pharmaceutical and biotechnology industries for sensitive and quantitative detection of …

Establishing a mass spectrometry-based system for rapid detection of SARS-CoV-2 in large clinical sample cohorts

KHM Cardozo, A Lebkuchen, GG Okai… - Nature …, 2020 - nature.com
The outbreak of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is pressing
public health systems around the world, and large population testing is a key step to control …