Statistically learning the functional landscape of microbial communities

A Skwara, K Gowda, M Yousef… - Nature ecology & …, 2023 - nature.com
Microbial consortia exhibit complex functional properties in contexts ranging from soils to
bioreactors to human hosts. Understanding how community composition determines …

Metabolomics and Microbial Metabolism: Toward a Systematic Understanding

D Holbrook-Smith, J Trouillon… - Annual Review of …, 2023 - annualreviews.org
Over the past decades, our understanding of microbial metabolism has increased
dramatically. Metabolomics, a family of techniques that are used to measure the quantities of …

From Fluctuations and Disorder to Scaling and Control: The Emergence of Resistance in Microbial Communities

J Moran, KB Wood - Annual Review of Condensed Matter …, 2024 - annualreviews.org
Antibiotics are a cornerstone of modern medicine, and antibiotic resistance is a growing
threat to public health. The evolution of resistance is a multiscale process shaped by many …

Urbanization simplifies soil nematode communities and coincides with decreased ecosystem stability

X Gong, Z Qiao, H Yao, D Zhao, N Eisenhauer… - Soil Biology and …, 2024 - Elsevier
Urbanization is threatening terrestrial biodiversity and ecosystem functions. Nematodes, as
one of the most abundant animals on Earth, play diverse roles within soil food webs and …

[HTML][HTML] Effects of organic nitrogen addition on soil microbial community assembly patterns in the Sanjiang Plain wetlands, northeastern China

M Wang, B Frey, D Li, X Liu, C Chen, Y Liu, R Zhang… - Applied Soil …, 2024 - Elsevier
Soil microorganisms are pivotal in global biogeochemical cycles, significantly influencing
energy flow and climate regulation. The Deyeuxia angustifolia wetland in the Sanjiang Plain …

Quantifying microbial guilds

J Rivas-Santisteban, P Yubero… - ISME …, 2024 - academic.oup.com
The ecological role of microorganisms is of utmost importance due to their multiple
interactions with the environment. However, assessing the contribution of individual …

Linear-regression-based algorithms can succeed at identifying microbial functional groups despite the nonlinearity of ecological function

Y Zhao, OX Cordero, M Tikhonov - PLoS computational biology, 2024 - journals.plos.org
Microbial communities play key roles across diverse environments. Predicting their function
and dynamics is a key goal of microbial ecology, but detailed microscopic descriptions of …

Microbial community composition predicts bacterial production across ocean ecosystems

E Connors, A Dutta, R Trinh, N Erazo… - The ISME …, 2024 - academic.oup.com
Microbial ecological functions are an emergent property of community composition. For
some ecological functions, this link is strong enough that community composition can be …

Temporal stability and community assembly mechanisms in healthy broiler cecum

A Ameer, Y Cheng, F Saleem, Uzma… - Frontiers in …, 2023 - frontiersin.org
In recent years, there has been an unprecedented advancement in in situ analytical
approaches that contribute to the mechanistic understanding of microbial communities by …

Eco-environmental responses of Eichhornia crassipes rhizobacteria community to co-stress of per (poly) fluoroalkyl substances and microplastics

ZW Chen, ZL Hua - Aquatic Toxicology, 2024 - Elsevier
The stabilization of rhizobacteria communities plays a crucial role in sustaining healthy
macrophyte growth. In light of increasing evidence of combined pollution from microplastics …