Genome structure, life cycle, and taxonomy of coronaviruses and the evolution of SARS-CoV-2

K Lamkiewicz, LR Esquivel Gomez, D Kühnert… - Viral Fitness and …, 2023 - Springer
Coronaviruses have a broad host range and exhibit high zoonotic potential. In this chapter,
we describe their genomic organization in terms of encoded proteins and provide an …

The impact of armed conflict on the prevalence and transmission dynamics of HIV infection in Libya

MA Daw, AH El-Bouzedi, MO Ahmed - Frontiers in Public Health, 2022 - frontiersin.org
The interrelationships between HIV/AIDS and armed conflict are a complex phenomenon,
and studies are rarely devoted to this area of research. Libya is the second-largest country in …

Ending the HIV epidemic: Identifying barriers and facilitators to implement molecular HIV surveillance to develop real-time cluster detection and response interventions …

M Garcia, S Devlin, J Kerman, K Fujimoto… - International journal of …, 2023 - mdpi.com
The rapid implementation of molecular HIV surveillance (MHS) has resulted in significant
challenges for local health departments to develop real-time cluster detection and response …

DeepDynaForecast: Phylogenetic-informed graph deep learning for epidemic transmission dynamic prediction

C Sun, R Fang, M Salemi, M Prosperi… - PLOS Computational …, 2024 - journals.plos.org
In the midst of an outbreak or sustained epidemic, reliable prediction of transmission risks
and patterns of spread is critical to inform public health programs. Projections of …

SARS-CoV-2 molecular transmission clusters and containment measures in ten European regions during the first pandemic wave

M Bousali, A Dimadi, EG Kostaki, S Tsiodras… - Life, 2021 - mdpi.com
Background: The spatiotemporal profiling of molecular transmission clusters (MTCs) using
viral genomic data can effectively identify transmission networks in order to inform public …

Early emergence phase of SARS-CoV-2 Delta variant in Florida, US

E Cella, S Ali, SE Schmedes, B Rife Magalis, S Marini… - Viruses, 2022 - mdpi.com
SARS-CoV-2, the causative agent of COVID-19, emerged in late 2019. The highly
contagious B. 1.617. 2 (Delta) variant of concern (VOC) was first identified in October 2020 …

Molecular epidemiological analysis of the origin and transmission dynamics of the HIV-1 CRF01_AE sub-epidemic in Bulgaria

I Alexiev, EM Campbell, S Knyazev, Y Pan, L Grigorova… - Viruses, 2021 - mdpi.com
HIV-1 subtype CRF01_AE is the second most predominant strain in Bulgaria, yet little is
known about the molecular epidemiology of its origin and transmissibility. We used a …

Multimodal approach to public health interventions using EGG and mobile health technologies

X Zhang, H Liu, M Sun, S Feng - Frontiers in Public Health, 2025 - frontiersin.org
Introduction Public health interventions increasingly integrate multimodal data sources, such
as Electroencephalogram (EEG) data, to enhance monitoring and predictive capabilities for …

Protocol for the development of a reporting guideline for causal and counterfactual prediction models in biomedicine

J Xu, Y Guo, F Wang, H Xu, R Lucero, J Bian… - BMJ open, 2022 - bmjopen.bmj.com
Introduction While there are guidelines for reporting on observational studies (eg,
Strengthening the Reporting of Observational Studies in Epidemiology, Reporting of Studies …

[HTML][HTML] Molecular epidemiology to aid virtual elimination of HIV transmission in Australia

BM Obeng, AD Kelleher, F Di Giallonardo - Virus Research, 2024 - Elsevier
Abstract The Global UNAIDS 95/95/95 targets aim to increase the percentage of persons
who know their HIV status, receive antiretroviral therapy, and have achieved viral …