In silico modeling of targeted protein degradation

W Lv, X Jia, B Tang, C Ma, X Fang, X **, Z Niu… - European Journal of …, 2025 - Elsevier
Targeted protein degradation (TPD) techniques, particularly proteolysis-targeting chimeras
(PROTAC) and molecular glue degraders (MGD), have offered novel strategies in drug …

A technical review of multi-omics data integration methods: from classical statistical to deep generative approaches

AR Baião, Z Cai, RC Poulos, PJ Robinson… - ar** using limited multi-omics data with missingness
Y Bu, J Liang, Z Li, J Wang, J Wang… - PLOS Computational …, 2024 - journals.plos.org
Diagnosing cancer subtypes is a prerequisite for precise treatment. Existing multi-omics data
fusion-based diagnostic solutions build on the requisite of sufficient samples with complete …

A deep contrastive multi-modal encoder for multi-omics data integration and analysis

M Yinghua, A Khan, Y Heng, FG Khan, F Ali… - Information …, 2025 - Elsevier
Cancer is a highly complex and fatal disease that affects various human organs. Early and
accurate cancer analysis is crucial for timely treatment, prognosis, and understanding of the …

[HTML][HTML] SGUQ: Staged Graph Convolution Neural Network for Alzheimer's Disease Diagnosis using Multi-Omics Data

L Tao, Y **e, JD Deng, H Shen, HW Deng, W Zhou… - Ar**v, 2024 - pmc.ncbi.nlm.nih.gov
Alzheimer's disease (AD) is a chronic neurodegenerative disorder and the leading cause of
dementia, significantly impacting cost, mortality, and burden worldwide. The advent of high …

A Multimodal Foundation Model for Discovering Genetic Associations with Brain Imaging Phenotypes

D Machado Reyes, M Burch, L Parida, A Bose - medRxiv, 2024 - medrxiv.org
Due to the intricate etiology of neurological disorders, finding interpretable associations
between multi-omics features can be challenging using standard approaches. We propose …

SGEGCAE: A Sparse Gating Enhanced Graph Convolutional Autoencoder for Multi-omics Data Integration and Classification

J Shang, L Zhang, L Zhao, X He, Y Zhao, D Ge… - … on Intelligent Computing, 2024 - Springer
Integration of multi-omics data is essential for obtaining comprehensive insights into
molecular mechanisms of complex diseases. While several methods have been proposed …