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Physical principles for DNA tile self-assembly
DNA tiles provide a promising technique for assembling structures with nanoscale resolution
through self-assembly by basic interactions rather than top-down assembly of individual …
through self-assembly by basic interactions rather than top-down assembly of individual …
Complexity of self-assembled shapes
The connection between self-assembly and computation suggests that a shape can be
considered the output of a self-assembly “program,” a set of tiles that fit together to create a …
considered the output of a self-assembly “program,” a set of tiles that fit together to create a …
Two computational primitives for algorithmic self-assembly: Copying and counting
Copying and counting are useful primitive operations for computation and construction. We
have made DNA crystals that copy and crystals that count as they grow. For counting, 16 …
have made DNA crystals that copy and crystals that count as they grow. For counting, 16 …
An introduction to tile-based self-assembly and a survey of recent results
MJ Patitz - Natural Computing, 2014 - Springer
We first give an introduction to the field of tile-based self-assembly, focusing primarily on
theoretical models and their algorithmic nature. We start with a description of Winfree's …
theoretical models and their algorithmic nature. We start with a description of Winfree's …
Running time and program size for self-assembled squares
Recently Rothemund and Winfree 6 have considered the program size complexity of
constructing squares by self-assembly. Here, we consider the time complexity of such …
constructing squares by self-assembly. Here, we consider the time complexity of such …
Intrinsic universality and the computational power of self-assembly
D Woods - … Transactions of the Royal Society A …, 2015 - royalsocietypublishing.org
Molecular self-assembly, the formation of large structures by small pieces of matter sticking
together according to simple local interactions, is a ubiquitous phenomenon. A challenging …
together according to simple local interactions, is a ubiquitous phenomenon. A challenging …
Theory of algorithmic self-assembly
D Doty - Communications of the ACM, 2012 - dl.acm.org
Theory of algorithmic self-assembly Page 1 78 communications of the acm | december 2012 |
vol. 55 | no. 12 review articles PHO T O g RAPH B Y ZUBEIR TAI seLF-asseMBLY is the process …
vol. 55 | no. 12 review articles PHO T O g RAPH B Y ZUBEIR TAI seLF-asseMBLY is the process …
Complexities for generalized models of self-assembly
In this paper, we study the complexity of self-assembly under models that are natural
generalizations of the tile self-assembly model. In particular, we extend Rothemund and …
generalizations of the tile self-assembly model. In particular, we extend Rothemund and …
The tile assembly model is intrinsically universal
We prove that the abstract Tile Assembly Model (aTAM) of nanoscale self-assembly is
intrinsically universal. This means that there is a single tile assembly system U that, with …
intrinsically universal. This means that there is a single tile assembly system U that, with …
Staged self-assembly: nanomanufacture of arbitrary shapes with O(1) glues
We introduce staged self-assembly of Wang tiles, where tiles can be added dynamically in
sequence and where intermediate constructions can be stored for later mixing. This model …
sequence and where intermediate constructions can be stored for later mixing. This model …