Physical principles for DNA tile self-assembly

CG Evans, E Winfree - Chemical Society Reviews, 2017 - pubs.rsc.org
DNA tiles provide a promising technique for assembling structures with nanoscale resolution
through self-assembly by basic interactions rather than top-down assembly of individual …

Complexity of self-assembled shapes

D Soloveichik, E Winfree - SIAM Journal on Computing, 2007 - SIAM
The connection between self-assembly and computation suggests that a shape can be
considered the output of a self-assembly “program,” a set of tiles that fit together to create a …

Two computational primitives for algorithmic self-assembly: Copying and counting

RD Barish, PWK Rothemund, E Winfree - Nano letters, 2005 - ACS Publications
Copying and counting are useful primitive operations for computation and construction. We
have made DNA crystals that copy and crystals that count as they grow. For counting, 16 …

An introduction to tile-based self-assembly and a survey of recent results

MJ Patitz - Natural Computing, 2014 - Springer
We first give an introduction to the field of tile-based self-assembly, focusing primarily on
theoretical models and their algorithmic nature. We start with a description of Winfree's …

Running time and program size for self-assembled squares

L Adleman, Q Cheng, A Goel, MD Huang - … of the thirty-third annual ACM …, 2001 - dl.acm.org
Recently Rothemund and Winfree 6 have considered the program size complexity of
constructing squares by self-assembly. Here, we consider the time complexity of such …

Intrinsic universality and the computational power of self-assembly

D Woods - … Transactions of the Royal Society A …, 2015 - royalsocietypublishing.org
Molecular self-assembly, the formation of large structures by small pieces of matter sticking
together according to simple local interactions, is a ubiquitous phenomenon. A challenging …

Theory of algorithmic self-assembly

D Doty - Communications of the ACM, 2012 - dl.acm.org
Theory of algorithmic self-assembly Page 1 78 communications of the acm | december 2012 |
vol. 55 | no. 12 review articles PHO T O g RAPH B Y ZUBEIR TAI seLF-asseMBLY is the process …

Complexities for generalized models of self-assembly

G Aggarwal, Q Cheng, MH Goldwasser, MY Kao… - SIAM Journal on …, 2005 - SIAM
In this paper, we study the complexity of self-assembly under models that are natural
generalizations of the tile self-assembly model. In particular, we extend Rothemund and …

The tile assembly model is intrinsically universal

D Doty, JH Lutz, MJ Patitz, RT Schweller… - 2012 IEEE 53rd …, 2012 - ieeexplore.ieee.org
We prove that the abstract Tile Assembly Model (aTAM) of nanoscale self-assembly is
intrinsically universal. This means that there is a single tile assembly system U that, with …

Staged self-assembly: nanomanufacture of arbitrary shapes with O(1) glues

ED Demaine, ML Demaine, SP Fekete, M Ishaque… - Natural Computing, 2008 - Springer
We introduce staged self-assembly of Wang tiles, where tiles can be added dynamically in
sequence and where intermediate constructions can be stored for later mixing. This model …