Kinetic basis for DNA target specificity of CRISPR-Cas12a

I Strohkendl, FA Saifuddin, JR Rybarski, IJ Finkelstein… - Molecular cell, 2018 - cell.com
Class 2 CRISPR-Cas nucleases are programmable genome editing tools with promising
applications in human health and disease. However, DNA cleavage at off-target sites that …

Real-time shape approximation and fingerprinting of single proteins using a nanopore

EC Yusko, BR Bruhn, OM Eggenberger… - Nature …, 2017 - nature.com
Established methods for characterizing proteins typically require physical or chemical
modification steps or cannot be used to examine individual molecules in solution. Ionic …

Single-molecule studies of protein folding with optical tweezers

C Bustamante, L Alexander, K Maciuba… - Annual review of …, 2020 - annualreviews.org
Manipulation of individual molecules with optical tweezers provides a powerful means of
interrogating the structure and folding of proteins. Mechanical force is not only a relevant …

Statistically optimal analysis of samples from multiple equilibrium states

MR Shirts, JD Chodera - The Journal of chemical physics, 2008 - pubs.aip.org
We present a new estimator for computing free energy differences and thermodynamic
expectations as well as their uncertainties from samples obtained from multiple equilibrium …

Single reconstituted neuronal SNARE complexes zipper in three distinct stages

Y Gao, S Zorman, G Gundersen, Z **, L Ma, G Sirinakis… - Science, 2012 - science.org
Soluble N-ethylmaleimide–sensitive factor attachment protein receptor (SNARE) proteins
drive membrane fusion by assembling into a four-helix bundle in a zippering process. Here …

Hidden dynamics in the unfolding of individual bacteriorhodopsin proteins

H Yu, MGW Siewny, DT Edwards, AW Sanders… - Science, 2017 - science.org
Protein folding occurs as a set of transitions between structural states within an energy
landscape. An oversimplified view of the folding process emerges when transiently …

Optical tweezers study life under tension

FM Fazal, SM Block - Nature photonics, 2011 - nature.com
Optical tweezers have become one of the primary weapons in the arsenal of biophysicists,
and have revolutionized the new field of single-molecule biophysics. Today's techniques …

Single-molecule dissection of stacking forces in DNA

F Kilchherr, C Wachauf, B Pelz, M Rief, M Zacharias… - Science, 2016 - science.org
INTRODUCTION In DNA double helices, hydrogen bonds connect the base pairs across the
two strands, and stacking bonds act along the helical axis between neighboring base pairs …