Using machine learning approaches for multi-omics data analysis: A review

PS Reel, S Reel, E Pearson, E Trucco… - Biotechnology advances, 2021 - Elsevier
With the development of modern high-throughput omic measurement platforms, it has
become essential for biomedical studies to undertake an integrative (combined) approach to …

A practical guide to selecting models for exploration, inference, and prediction in ecology

AT Tredennick, G Hooker, SP Ellner, PB Adler - Ecology, 2021 - Wiley Online Library
Selecting among competing statistical models is a core challenge in science. However, the
many possible approaches and techniques for model selection, and the conflicting …

Molecular international prognostic scoring system for myelodysplastic syndromes

E Bernard, H Tuechler, PL Greenberg… - NEJM …, 2022 - evidence.nejm.org
Background Risk stratification and therapeutic decision-making for myelodysplastic
syndromes (MDS) are based on the International Prognostic Scoring System–Revised (IPSS …

Ensemble-SINDy: Robust sparse model discovery in the low-data, high-noise limit, with active learning and control

U Fasel, JN Kutz, BW Brunton… - Proceedings of the …, 2022 - royalsocietypublishing.org
Sparse model identification enables the discovery of nonlinear dynamical systems purely
from data; however, this approach is sensitive to noise, especially in the low-data limit. In this …

Big-data science in porous materials: materials genomics and machine learning

KM Jablonka, D Ongari, SM Moosavi, B Smit - Chemical reviews, 2020 - ACS Publications
By combining metal nodes with organic linkers we can potentially synthesize millions of
possible metal–organic frameworks (MOFs). The fact that we have so many materials opens …

Faecal microbiota transplantation halts progression of human new-onset type 1 diabetes in a randomised controlled trial

P De Groot, T Nikolic, S Pellegrini, V Sordi… - Gut, 2021 - gut.bmj.com
Objective Type 1 diabetes (T1D) is characterised by islet autoimmunity and beta cell
destruction. A gut microbiota–immunological interplay is involved in the pathophysiology of …

[HTML][HTML] Stability of feature selection algorithm: A review

UM Khaire, R Dhanalakshmi - Journal of King Saud University-Computer …, 2022 - Elsevier
Feature selection technique is a knowledge discovery tool which provides an understanding
of the problem through the analysis of the most relevant features. Feature selection aims at …

A simple new approach to variable selection in regression, with application to genetic fine map**

G Wang, A Sarkar, P Carbonetto… - Journal of the Royal …, 2020 - academic.oup.com
We introduce a simple new approach to variable selection in linear regression, with a
particular focus on quantifying uncertainty in which variables should be selected. The …

All models are wrong, but many are useful: Learning a variable's importance by studying an entire class of prediction models simultaneously

A Fisher, C Rudin, F Dominici - Journal of Machine Learning Research, 2019 - jmlr.org
Variable importance (VI) tools describe how much covariates contribute to a prediction
model's accuracy. However, important variables for one well-performing model (for example …

Identification of shared and disease-specific host gene–microbiome associations across human diseases using multi-omic integration

S Priya, MB Burns, T Ward, RAT Mars… - Nature …, 2022 - nature.com
While gut microbiome and host gene regulation independently contribute to gastrointestinal
disorders, it is unclear how the two may interact to influence host pathophysiology. Here we …