Automated clinical coding: what, why, and where we are?

H Dong, M Falis, W Whiteley, B Alex, J Matterson… - NPJ digital …, 2022 - nature.com
Clinical coding is the task of transforming medical information in a patient's health records
into structured codes so that they can be used for statistical analysis. This is a cognitive and …

Automated medical coding on MIMIC-III and MIMIC-IV: a critical review and replicability study

J Edin, A Junge, JD Havtorn, L Borgholt… - Proceedings of the 46th …, 2023 - dl.acm.org
Medical coding is the task of assigning medical codes to clinical free-text documentation.
Healthcare professionals manually assign such codes to track patient diagnoses and …

Knowledge injected prompt based fine-tuning for multi-label few-shot icd coding

Z Yang, S Wang, BPS Rawat… - Proceedings of the …, 2022 - pmc.ncbi.nlm.nih.gov
Automatic International Classification of Diseases (ICD) coding aims to assign multiple ICD
codes to a medical note with average length of 3,000+ tokens. This task is challenging due …

Transforming clinical trials: the emerging roles of large language models

JL Ghim, S Ahn - Translational and clinical pharmacology, 2023 - pmc.ncbi.nlm.nih.gov
Clinical trials are essential for medical research, but they often face challenges in matching
patients to trials and planning. Large language models (LLMs) offer a promising solution …

Can GPT-3.5 generate and code discharge summaries?

M Falis, AP Gema, H Dong, L Daines… - Journal of the …, 2024 - academic.oup.com
Objectives The aim of this study was to investigate GPT-3.5 in generating and coding
medical documents with International Classification of Diseases (ICD)-10 codes for data …

Large language models in drug discovery and development: From disease mechanisms to clinical trials

Y Zheng, HY Koh, M Yang, L Li, LT May… - arxiv preprint arxiv …, 2024 - arxiv.org
The integration of Large Language Models (LLMs) into the drug discovery and development
field marks a significant paradigm shift, offering novel methodologies for understanding …

[HTML][HTML] Retrieve and rerank for automated ICD coding via contrastive learning

K Niu, Y Wu, Y Li, M Li - Journal of Biomedical Informatics, 2023 - Elsevier
Automated ICD coding is a multi-label prediction task aiming at assigning patient diagnoses
with the most relevant subsets of disease codes. In the deep learning regime, recent works …

Clinicalmamba: A generative clinical language model on longitudinal clinical notes

Z Yang, A Mitra, S Kwon, H Yu - arxiv preprint arxiv:2403.05795, 2024 - arxiv.org
The advancement of natural language processing (NLP) systems in healthcare hinges on
language model ability to interpret the intricate information contained within clinical notes …

Knowledge graphs for the life sciences: Recent developments, challenges and opportunities

J Chen, H Dong, J Hastings, E Jiménez-Ruiz… - arxiv preprint arxiv …, 2023 - arxiv.org
The term life sciences refers to the disciplines that study living organisms and life processes,
and include chemistry, biology, medicine, and a range of other related disciplines. Research …

Transformer models in biomedicine

S Madan, M Lentzen, J Brandt, D Rueckert… - BMC Medical Informatics …, 2024 - Springer
Deep neural networks (DNN) have fundamentally revolutionized the artificial intelligence
(AI) field. The transformer model is a type of DNN that was originally used for the natural …