Use of unstructured text in prognostic clinical prediction models: a systematic review

TM Seinen, EA Fridgeirsson, S Ioannou… - Journal of the …, 2022 - academic.oup.com
Objective This systematic review aims to assess how information from unstructured text is
used to develop and validate clinical prognostic prediction models. We summarize the …

Clinicalbert: Modeling clinical notes and predicting hospital readmission

K Huang, J Altosaar, R Ranganath - arxiv preprint arxiv:1904.05342, 2019 - arxiv.org
Clinical notes contain information about patients that goes beyond structured data like lab
values and medications. However, clinical notes have been underused relative to structured …

Combining structured and unstructured data for predictive models: a deep learning approach

D Zhang, C Yin, J Zeng, X Yuan, P Zhang - BMC medical informatics and …, 2020 - Springer
Background The broad adoption of electronic health records (EHRs) provides great
opportunities to conduct health care research and solve various clinical problems in …

Machine learning applications for therapeutic tasks with genomics data

K Huang, C **ao, LM Glass, CW Critchlow, G Gibson… - Patterns, 2021 - cell.com
Thanks to the increasing availability of genomics and other biomedical data, many machine
learning algorithms have been proposed for a wide range of therapeutic discovery and …

Write it like you see it: Detectable differences in clinical notes by race lead to differential model recommendations

H Adam, MY Yang, K Cato, I Baldini, C Senteio… - Proceedings of the …, 2022 - dl.acm.org
Clinical notes are becoming an increasingly important data source for machine learning
(ML) applications in healthcare. Prior research has shown that deploying ML models can …

Attention-based multimodal fusion with contrast for robust clinical prediction in the face of missing modalities

J Liu, D Capurro, A Nguyen, K Verspoor - Journal of Biomedical Informatics, 2023 - Elsevier
Objective: With the increasing amount and growing variety of healthcare data, multimodal
machine learning supporting integrated modeling of structured and unstructured data is an …

Clinical prompt learning with frozen language models

N Taylor, Y Zhang, DW Joyce, Z Gao… - … on Neural Networks …, 2023 - ieeexplore.ieee.org
When the first transformer-based language models were published in the late 2010s,
pretraining with general text and then fine-tuning the model on a task-specific dataset often …

Clinical outcome prediction from admission notes using self-supervised knowledge integration

B Van Aken, JM Papaioannou, M Mayrdorfer… - arxiv preprint arxiv …, 2021 - arxiv.org
Outcome prediction from clinical text can prevent doctors from overlooking possible risks
and help hospitals to plan capacities. We simulate patients at admission time, when decision …

Fineehr: Refine clinical note representations to improve mortality prediction

J Wu, X Ye, C Mou, W Dai - 2023 11th International Symposium …, 2023 - ieeexplore.ieee.org
Monitoring the health status of patients in the Intensive Care Unit (ICU) is a critical aspect of
providing superior care and treatment. The availability of large-scale electronic health …

[HTML][HTML] “Note Bloat” impacts deep learning-based NLP models for clinical prediction tasks

J Liu, D Capurro, A Nguyen, K Verspoor - Journal of biomedical informatics, 2022 - Elsevier
One unintended consequence of the Electronic Health Records (EHR) implementation is the
overuse of content-importing technology, such as copy-and-paste, that creates “bloated” …