Material-specific binding peptides empower sustainable innovations in plant health, biocatalysis, medicine and microplastic quantification

M Mao, L Ahrens, J Luka, F Contreras… - Chemical Society …, 2024 - pubs.rsc.org
Material-binding peptides (MBPs) have emerged as a diverse and innovation-enabling class
of peptides in applications such as plant-/human health, immobilization of catalysts …

Directed evolution empowered redesign of natural proteins for the sustainable production of chemicals and pharmaceuticals

UT Bornscheuer, B Hauer, KE Jaeger… - Angewandte Chemie …, 2019 - Wiley Online Library
Directed evolution has advanced into a standard industrial “tool” to tailor naturally occurring
proteins for a variety of biotechnological applications, thus enabling product valorization and …

Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently

A Currin, N Swainston, PJ Day, DB Kell - Chemical Society Reviews, 2015 - pubs.rsc.org
The amino acid sequence of a protein affects both its structure and its function. Thus, the
ability to modify the sequence, and hence the structure and activity, of individual proteins in …

Iterative saturation mutagenesis (ISM) for rapid directed evolution of functional enzymes

MT Reetz, JD Carballeira - Nature protocols, 2007 - nature.com
Iterative saturation mutagenesis (ISM) is a new and efficient method for the directed
evolution of functional enzymes. It reduces the necessary molecular biological work and the …

Laboratory evolution of stereoselective enzymes: a prolific source of catalysts for asymmetric reactions

MT Reetz - Angewandte Chemie International Edition, 2011 - Wiley Online Library
Asymmetric catalysis plays a key role in modern synthetic organic chemistry, with synthetic
catalysts and enzymes being the two available options. During the latter part of the last …

Development of potent in vivo mutagenesis plasmids with broad mutational spectra

AH Badran, DR Liu - Nature communications, 2015 - nature.com
Methods to enhance random mutagenesis in cells offer advantages over in vitro
mutagenesis, but current in vivo methods suffer from a lack of control, genomic instability …

How protein stability and new functions trade off

N Tokuriki, F Stricher, L Serrano… - PLoS computational …, 2008 - journals.plos.org
Numerous studies have noted that the evolution of new enzymatic specificities is
accompanied by loss of the protein's thermodynamic stability (ΔΔ G), thus suggesting a …

The power of multiplexed functional analysis of genetic variants

M Gasperini, L Starita, J Shendure - Nature protocols, 2016 - nature.com
New technologies have recently enabled saturation mutagenesis and functional analysis of
nearly all possible variants of regulatory elements or proteins of interest in single …

Massively parallel single-amino-acid mutagenesis

JO Kitzman, LM Starita, RS Lo, S Fields, J Shendure - Nature methods, 2015 - nature.com
Random mutagenesis methods only partially cover the mutational space and are
constrained by DNA synthesis length limitations. Here we demonstrate programmed allelic …

Machine learning-assisted enzyme engineering

NE Siedhoff, U Schwaneberg, MD Davari - Methods in enzymology, 2020 - Elsevier
Directed evolution and rational design are powerful strategies in protein engineering to tailor
enzyme properties to meet the demands in academia and industry. Traditional approaches …