Graph representation learning in bioinformatics: trends, methods and applications

HC Yi, ZH You, DS Huang… - Briefings in …, 2022‏ - academic.oup.com
Graph is a natural data structure for describing complex systems, which contains a set of
objects and relationships. Ubiquitous real-life biomedical problems can be modeled as …

Distributed graph neural network training: A survey

Y Shao, H Li, X Gu, H Yin, Y Li, X Miao… - ACM Computing …, 2024‏ - dl.acm.org
Graph neural networks (GNNs) are a type of deep learning models that are trained on
graphs and have been successfully applied in various domains. Despite the effectiveness of …

Towards better dynamic graph learning: New architecture and unified library

L Yu, L Sun, B Du, W Lv - Advances in Neural Information …, 2023‏ - proceedings.neurips.cc
We propose DyGFormer, a new Transformer-based architecture for dynamic graph learning.
DyGFormer is conceptually simple and only needs to learn from nodes' historical first-hop …

Pytorch geometric temporal: Spatiotemporal signal processing with neural machine learning models

B Rozemberczki, P Scherer, Y He… - Proceedings of the 30th …, 2021‏ - dl.acm.org
We present PyTorch Geometric Temporal, a deep learning framework combining state-of-the-
art machine learning algorithms for neural spatiotemporal signal processing. The main goal …

Graph representation learning and its applications: A survey

VT Hoang, HJ Jeon, ES You, Y Yoon, S Jung, OJ Lee - Sensors, 2023‏ - mdpi.com
Graphs are data structures that effectively represent relational data in the real world. Graph
representation learning is a significant task since it could facilitate various downstream …