Methodological trends and perspectives of animal dietary studies by noninvasive fecal DNA metabarcoding

H Ando, H Mukai, T Komura, T Dewi… - Environmental …, 2020 - Wiley Online Library
Fine‐scale estimation of trophic interactions is an important subject in the field of ecology.
Diet analysis based on fecal DNA metabarcoding has been accepted as a noninvasive …

Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance

AM Piper, J Batovska, NOI Cogan, J Weiss… - …, 2019 - academic.oup.com
Trap-based surveillance strategies are widely used for monitoring of invasive insect species,
aiming to detect newly arrived exotic taxa as well as track the population levels of …

An assessment of minimum sequence copy thresholds for identifying and reducing the prevalence of artefacts in dietary metabarcoding data

LE Drake, JP Cuff, RE Young… - Methods in Ecology …, 2022 - Wiley Online Library
Metabarcoding provides a powerful tool for investigating biodiversity and trophic
interactions, but the high sensitivity of this methodology makes it vulnerable to errors …

Towards exhaustive community ecology via DNA metabarcoding

GF Ficetola, P Taberlet - Molecular Ecology, 2023 - Wiley Online Library
Exhaustive biodiversity data, covering all the taxa in an environment, would be fundamental
to understand how global changes influence organisms living at different trophic levels, and …

A guide to the application of Hill numbers to DNA‐based diversity analyses

A Alberdi, MTP Gilbert - Molecular Ecology Resources, 2019 - Wiley Online Library
With the advent of DNA sequencing‐based techniques, the way we detect and measure
biodiversity is undergoing a radical shift. There is also an increasing awareness of the need …

Overcoming the pitfalls of merging dietary metabarcoding into ecological networks

JP Cuff, FM Windsor, MPTG Tercel… - Methods in Ecology …, 2022 - Wiley Online Library
The construction of increasingly detailed species interaction networks is extending the
potential applications of network ecology, providing an opportunity to understand complex …

Is the metabarcoding ripe enough to be applied to the authentication of foodstuff of animal origin? A systematic review

A Giusti, C Malloggi, G Magagna… - … Reviews in Food …, 2024 - Wiley Online Library
Food authentication using molecular techniques is of great importance to fight food fraud.
Metabarcoding, based on the next‐generation sequencing (NGS) technologies, allowing …

Current methods and future directions in avian diet analysis

BD Hoenig, AM Snider, AM Forsman, KA Hobson… - The Auk, 2022 - academic.oup.com
Identifying the composition of avian diets is a critical step in characterizing the roles of birds
within ecosystems. However, because birds are a diverse taxonomic group with equally …

[HTML][HTML] Fish environmental RNA enables precise ecological surveys with high positive predictivity

K Miyata, Y Inoue, Y Amano, T Nishioka, M Yamane… - Ecological …, 2021 - Elsevier
Metabarcoding analysis using environmental DNA (eDNA) is increasingly being used for
monitoring biota. However, knowledge regarding abundance of fish environmental RNA …

Advancing the integration of multi‐marker metabarcoding data in dietary analysis of trophic generalists

LP da Silva, VA Mata, PB Lopes… - Molecular Ecology …, 2019 - Wiley Online Library
The application of DNA metabarcoding to dietary analysis of trophic generalists requires
using multiple markers in order to overcome problems of primer specificity and bias …