Cellular and biophysical applications of genetic code expansion

HB Yi, S Lee, K Seo, H Kim, M Kim, HS Lee - Chemical Reviews, 2024 - ACS Publications
Despite their diverse functions, proteins are inherently constructed from a limited set of
building blocks. These compositional constraints pose significant challenges to protein …

Fluorescent amino acids as versatile building blocks for chemical biology

Z Cheng, E Kuru, A Sachdeva, M Vendrell - Nature Reviews Chemistry, 2020 - nature.com
Fluorophores have transformed the way we study biological systems, enabling non-invasive
studies in cells and intact organisms, which increase our understanding of complex …

Recent advances in biocatalysis with chemical modification and expanded amino acid alphabet

AD Pagar, MD Patil, DT Flood, TH Yoo… - Chemical …, 2021 - ACS Publications
The two main strategies for enzyme engineering, directed evolution and rational design,
have found widespread applications in improving the intrinsic activities of proteins. Although …

Engineering of flexible loops in enzymes

BM Nestl, B Hauer - Acs Catalysis, 2014 - ACS Publications
From a chemical point of view, enzymes are by far the most structurally complex and
functionally sophisticated molecules known. This is perhaps not surprising, once one …

Cyanotryptophans as novel fluorescent probes for studying protein conformational changes and DNA–protein interaction

P Talukder, S Chen, B Roy, P Yakovchuk… - Biochemistry, 2015 - ACS Publications
Described herein are the syntheses and photophysical characterization of three novel
cyanotryptophans, and their efficient incorporation into proteins as fluorescent probes …

Recent technologies for genetic code expansion and their implications on synthetic biology applications

H Tang, P Zhang, X Luo - Journal of molecular biology, 2022 - Elsevier
Genetic code expansion (GCE) enables the site-specific incorporation of non-canonical
amino acids as novel building blocks for the investigation and manipulation of proteins. The …

Monitoring protein conformational changes using fluorescent nanoantennas

SG Harroun, D Lauzon, MC Ebert, A Desrosiers… - Nature …, 2022 - nature.com
Understanding the relationship between protein structural dynamics and function is crucial
for both basic research and biotechnology. However, methods for studying the fast dynamics …

Diversity-oriented approaches to unusual α-amino acids and peptides: step economy, atom economy, redox economy, and beyond

S Kotha, D Goyal, AS Chavan - The Journal of Organic Chemistry, 2013 - ACS Publications
Here we describe several useful strategies to a variety of unusual α-amino acid derivatives
and peptides based on “building block” approach. These building blocks are suitable for …

Ribosome-mediated incorporation of dipeptides and dipeptide analogues into proteins in vitro

R Maini, LM Dedkova, R Paul… - Journal of the …, 2015 - ACS Publications
Plasmids containing 23S rRNA randomized at positions 2057–2063 and 2502–2507 were
introduced into Escherichia coli, affording a library of clones which produced modified …

Unnatural amino acid mutagenesis-based enzyme engineering

Y Ravikumar, SP Nadarajan, TH Yoo, C Lee… - Trends in …, 2015 - cell.com
Traditional enzyme engineering relies on substituting one amino acid by one of the other 19
natural amino acids to change the functional properties of an enzyme. However …