Protein design: From the aspect of water solubility and stability

R Qing, S Hao, E Smorodina, D **, A Zalevsky… - Chemical …, 2022 - ACS Publications
Water solubility and structural stability are key merits for proteins defined by the primary
sequence and 3D-conformation. Their manipulation represents important aspects of the …

The Caenorhabditis elegans cuticle and precuticle: a model for studying dynamic apical extracellular matrices in vivo

MV Sundaram, N Pujol - Genetics, 2024 - academic.oup.com
Apical extracellular matrices (aECMs) coat the exposed surfaces of animal bodies to shape
tissues, influence social interactions, and protect against pathogens and other …

Screening membraneless organelle participants with machine-learning models that integrate multimodal features

Z Chen, C Hou, L Wang, C Yu, T Chen… - Proceedings of the …, 2022 - National Acad Sciences
Protein self-assembly is one of the formation mechanisms of biomolecular condensates.
However, most phase-separating systems (PS) demand multiple partners in biological …

Interactions between nascent proteins translated by adjacent ribosomes drive homomer assembly

M Bertolini, K Fenzl, I Kats, F Wruck, F Tippmann… - Science, 2021 - science.org
INTRODUCTION Most newly synthesized proteins associate into macromolecular
complexes to become functional. Complex formation requires that subunits find each other …

Sequential dynein effectors regulate axonal autophagosome motility in a maturation-dependent pathway

SE Cason, PJ Carman, C Van Duyne… - Journal of Cell …, 2021 - rupress.org
Autophagy is a degradative pathway required to maintain homeostasis. Neuronal
autophagosomes form constitutively at the axon terminal and mature via lysosomal fusion …

Mechanism of DNA end sensing and processing by the Mre11-Rad50 complex

L Käshammer, JH Saathoff, K Lammens, F Gut… - Molecular cell, 2019 - cell.com
DNA double-strand breaks (DSBs) threaten genome stability throughout life and are linked
to tumorigenesis in humans. To initiate DSB repair by end joining or homologous …

Structural validation and assessment of AlphaFold2 predictions for centrosomal and centriolar proteins and their complexes

M van Breugel, I Rosa e Silva, A Andreeva - Communications biology, 2022 - nature.com
Obtaining the high-resolution structures of proteins and their complexes is a crucial aspect of
understanding the mechanisms of life. Experimental structure determination methods are …

Socket2: a program for locating, visualizing and analyzing coiled-coil interfaces in protein structures

P Kumar, DN Woolfson - Bioinformatics, 2021 - academic.oup.com
Motivation Protein–protein interactions are central to all biological processes. One frequently
observed mode of such interactions is the α-helical coiled coil (CC). Thus, an ability to …

Structural insights into plasmalemma vesicle-associated protein (PLVAP): implications for vascular endothelial diaphragms and fenestrae

TH Chang, FL Hsieh, X Gu… - Proceedings of the …, 2023 - National Acad Sciences
In many organs, small openings across capillary endothelial cells (ECs) allow the diffusion
of low–molecular weight compounds and small proteins between the blood and tissue …

IMC29 Plays an Important Role in Toxoplasma Endodyogeny and Reveals New Components of the Daughter-Enriched IMC Proteome

PS Back, AS Moon, RR Pasquarelli, HN Bell, JA Torres… - MBio, 2023 - Am Soc Microbiol
The Toxoplasma inner membrane complex (IMC) is a unique organelle that plays critical
roles in parasite motility, invasion, egress, and replication. The IMC is delineated into the …