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[HTML][HTML] Modeling membranes in situ
Molecular dynamics simulations of cellular membranes have come a long way—from simple
model lipid bilayers to multicomponent systems capturing the crowded and complex nature …
model lipid bilayers to multicomponent systems capturing the crowded and complex nature …
Pathways to a shiny future: Building the foundation for computational physical chemistry and biophysics in 2050
In the last quarter-century, the field of molecular dynamics (MD) has undergone a
remarkable transformation, propelled by substantial enhancements in software, hardware …
remarkable transformation, propelled by substantial enhancements in software, hardware …
Interaction of MRI Contrast Agent [Gd(DOTA)]− with Lipid Membranes: A Molecular Dynamics Study
Contrast agents are important imaging probes in clinical MRI, allowing the identification of
anatomic changes that otherwise would not be possible. Intensive research on the …
anatomic changes that otherwise would not be possible. Intensive research on the …
Solid-state NMR validation of OPLS4: Structure of pc-lipid bilayers and its modulation by dehydration
M Kurki, AM Nesterenko, NE Alsaker… - The Journal of …, 2024 - ACS Publications
Atomistic molecular dynamics (MD) simulations are a much-used tool for investigating the
structure and dynamics of biomembranes with atomic resolution. The validity of the …
structure and dynamics of biomembranes with atomic resolution. The validity of the …
Probing the dynamic landscape of peptides in molecular assemblies by synergized NMR experiments and MD simulations
R Nencini, MLG Regnier, SM Backlund… - Communications …, 2024 - nature.com
Peptides or proteins containing small biomolecular aggregates, such as micelles, bicelles,
droplets and nanodiscs, are pivotal in many fields ranging from structural biology to …
droplets and nanodiscs, are pivotal in many fields ranging from structural biology to …
Evaluating polarizable biomembrane simulations against experiments
Owing to the increase of available computational capabilities and the potential for providing
a more accurate description, polarizable molecular dynamics force fields are gaining …
a more accurate description, polarizable molecular dynamics force fields are gaining …
Free Energy of Membrane Pore Formation and Stability from Molecular Dynamics Simulations
Understanding the molecular mechanisms of pore formation is crucial for elucidating
fundamental biological processes and develo** therapeutic strategies, such as the design …
fundamental biological processes and develo** therapeutic strategies, such as the design …
[HTML][HTML] Membrane binding and lipid-protein interaction of the C2 domain from coagulation factor V
YZ Ohkubo, PW Radulovic, AN Kahira… - Current Research In …, 2024 - Elsevier
Anchoring of coagulation factors to anionic regions of the membrane involves the C2
domain as a key player. The rate of enzymatic reactions of the coagulation factors is …
domain as a key player. The rate of enzymatic reactions of the coagulation factors is …
Meta-Analysis of Permeability Literature Data Shows Possibilities and Limitations of Popular Methods
K Storchmannová, M Balouch, J Juračka… - Molecular …, 2024 - ACS Publications
Permeability is an important molecular property in drug discovery, as it co-determines
pharmacokinetics whenever a drug crosses the phospholipid bilayer, eg, into the cell, in the …
pharmacokinetics whenever a drug crosses the phospholipid bilayer, eg, into the cell, in the …
Signal peptidase SpsB coordinates staphylococcal cell cycle, surface protein septal trafficking, and LTA synthesis
Cell wall-anchored surface proteins of Gram-positive bacteria, harboring a highly conserved
YSIRK/GS signal peptide (SPYSIRK+), are deposited at cell division septum and anchored …
YSIRK/GS signal peptide (SPYSIRK+), are deposited at cell division septum and anchored …