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Beyond assembly: the increasing flexibility of single-molecule sequencing technology
The maturation of high-throughput short-read sequencing technology over the past two
decades has shaped the way genomes are studied. Recently, single-molecule, long-read …
decades has shaped the way genomes are studied. Recently, single-molecule, long-read …
Portable nanopore-sequencing technology: Trends in development and applications
P Chen, Z Sun, J Wang, X Liu, Y Bai, J Chen… - Frontiers in …, 2023 - frontiersin.org
Sequencing technology is the most commonly used technology in molecular biology
research and an essential pillar for the development and applications of molecular biology …
research and an essential pillar for the development and applications of molecular biology …
Simulation of nanopore sequencing signal data with tunable parameters
In silico simulation of high-throughput sequencing data is a technique used widely in the
genomics field. However, there is currently a lack of effective tools for creating simulated …
genomics field. However, there is currently a lack of effective tools for creating simulated …
Efficient real-time selective genome sequencing on resource-constrained devices
Background Third-generation nanopore sequencers offer selective sequencing or “Read
Until” that allows genomic reads to be analyzed in real time and abandoned halfway if not …
Until” that allows genomic reads to be analyzed in real time and abandoned halfway if not …
Real‐time genomics for One Health
The ongoing degradation of natural systems and other environmental changes has put our
society at a crossroad with respect to our future relationship with our planet. While the …
society at a crossroad with respect to our future relationship with our planet. While the …
Accelerated nanopore basecalling with SLOW5 data format
Motivation Nanopore sequencing is emerging as a key pillar in the genomic technology
landscape but computational constraints limiting its scalability remain to be overcome. The …
landscape but computational constraints limiting its scalability remain to be overcome. The …
Accelerated dynamic time war** on GPU for selective nanopore sequencing
H Sadasivan, D Stiffler, A Tirumala, J Israeli… - bioRxiv, 2023 - biorxiv.org
The design and supply of RT-PCR primers for accurate virus testing is a complex process.
The MinION is a revolutionary portable nanopore DNA sequencer that may be used to …
The MinION is a revolutionary portable nanopore DNA sequencer that may be used to …
DeepSelectNet: deep neural network based selective sequencing for oxford nanopore sequencing
Background Nanopore sequencing allows selective sequencing, the ability to
programmatically reject unwanted reads in a sample. Selective sequencing has many …
programmatically reject unwanted reads in a sample. Selective sequencing has many …
[HTML][HTML] Rapid real-time squiggle classification for read until using rawmap
Abstract ReadUntil enables Oxford Nanopore Technology's (ONT) sequencers to selectively
sequence reads of target species in real-time. This enables efficient microbial enrichment for …
sequence reads of target species in real-time. This enables efficient microbial enrichment for …
The application of metagenomics to study microbial communities and develop desirable traits in fermented foods
The microbial communities present within fermented foods are diverse and dynamic,
producing a variety of metabolites responsible for the fermentation processes, imparting …
producing a variety of metabolites responsible for the fermentation processes, imparting …